Stem-loop gma-MIR5044

Accession

MI0017925

Description

Glycine max gma-MIR5044 precursor miRNA

Gene family

MIPF0001288; MIR5037

Sequence

uaguggccucaaaggcuuccacuacugcauguuucugugguuuaauauccugaaacaagugGUAGUGGAUGCCUAGAGGUCCAuuaaaagcaaugcucauguuuuuauccucugaaauuucuacaauauauuuuguagccaaauacuguga
(((((((((...))))...)))))..((.((((((.(.(((.....)))).)))))).))((((.(((.....((((((.....((((((((.......)))))))).))))))......((((((......)))))))))..))))....

Structure

uaguggccucaaaggcuuccacuacugcauguuucugugguuuaauauccugaaacaagu    -G   -------------------AUGCC      UCCAu        au 
                                                            gGUA  UGG                        UAGAGG     uaaaagca  g
                                                            ||||  |||                        ||||||     ||||||||  c
                                                            ucau  acc                        gucucc     auuuuugu  u
--------------------------------------------------------agug    aa   gauguuuuauauaacaucuuuaaa      ----u        ac 

Annotation confidence Not enough data

Genome context

chr18: 57357782-57357932 [-]

Mature gma-miR5044

• Accession: MIMAT0021075
• Description: Glycine max gma-miR5044 mature miRNA
• Sequence: 62 - GUAGUGGAUGCCUAGAGGUCCA - 83
• Evidence: experimental ; SOLiD [1], Illumina [2-3]

References

1. PubMed ID: 21663675
   Identification of novel soybean microRNAs involved in abiotic and biotic stresses
   Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
   BMC Genomics (2011) 12:307


2. PubMed ID: 21751852
   Transcriptional analysis of soybean root response to Fusarium virguliforme, the causal agent of sudden death syndrome
   "Radwan O, Liu Y, Clough SJ"
   "Mol Plant Microbe Interact (2011) 24:958-972


3. PubMed ID: 24475082
   Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons
   Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ
   PLoS One (2014) 9:e86153