Stem-loop hvu-MIR5050

Accession

MI0017937

Description

Hordeum vulgare hvu-MIR5050 precursor miRNA

Gene family

MIPF0002014; MIR5050

Literature search

1 open access papers mention hvu-MIR5050
(2 sentences)

Sequence

gcugguguuuuugccgguugaacgaccucaccaugucgaccgccucuuccuugacagguaucaggaagaaaagaucugcucgugccaugUUGAGGUCGUUCAACCAGCAAaacggcggc
((((.((((((.((.(((((((((((((((.((((.(((..((.(((((((.((......)))))))))........)))))...)))).))))))))))))))).)))))))).))))

Structure

    g      u  c               c    --u   cc  -------c       u  ca 
gcug uguuuu gc gguugaacgaccuca caug   cga  gc        ucuuccu ga  g
|||| |||||| || ||||||||||||||| ||||   |||  ||        ||||||| ||   
cggc gcaaAA CG CCAACUUGCUGGAGU guac   gcu  cg        agaagga cu  g
    g      -  A               U    cgu   --  ucuagaaa       -  au 

Annotation confidence Not enough data

Genome context

Unknown

Mature hvu-miR5050

• Accession: MIMAT0020546
• Description: Hordeum vulgare hvu-miR5050 mature miRNA
• Sequence: 90 - UUGAGGUCGUUCAACCAGCAA - 110
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21352554
   Discovery of barley miRNAs through deep sequencing of short reads
   Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U
   BMC Genomics (2011) 12:129