Stem-loop bdi-MIR5055

Accession

MI0017944

Description

Brachypodium distachyon bdi-MIR5055 precursor miRNA

Sequence

gguuacaagcUCUCGCUGCUGAGCUCGGCGUugcguugcaaggagcagaguauuuaaccugcgccgacaguuguuaaacaggcaaggugggacuaaaaagggugucgccuacuguacuggcuggcgauggcaacugggcuguguggcgcaccgcagcugggccguuggcauacuggacuugccuguuuauaaaacugggcacgggucaaaacguucgauaucgccagcagggccauuguuu
....(((((((((.((((.(((..((((((((((.((((.....)))).)).....(((((.(((..(((((..((((((((((((((((.(((......))).))))))...((.((((.((.(((((((.....(((((((.(.....))))))))..))))))).))..)))))).))))))))))...)))))))).)))))...)))).))))..))).)))))))))..))))..

Structure

gguu    --     C    C   GC    -    gcguugcaaggagcagaguauuua     c   ga     -gu          aggugggacuaaaaagggugucgccuacu  a    -c  g       aacug       u g 
    acaa  gcUCU GCUG UGA  UCGG CGUu                        accug gcc  caguu   uaaacaggca                             gu cugg  ug cgauggc     ggcugug g c
    ||||  ||||| |||| |||  |||| ||||                        ||||| |||  |||||   ||||||||||                             || ||||  || |||||||     ||||||| | g
    uguu  cggga cgac gcu  agcu gcaa                        ugggc cgg  gucaa   auuuguccgu                             ca gguc  ac guugccg     ucgacgc c c
--uu    ac     -    c   au    u    ---------------------aac     a   --     aau          ----------------------------u  -    au  g       ---gg       - a 

Annotation confidence Not enough data

Comments

This is a predicted homolog of a miRNA identified by Illumina deep sequencing in barley (Hordeum vulgare) [1].

Genome context

3: 13969508-13969748 [+]

Mature bdi-miR5055

• Accession: MIMAT0020553
• Description: Brachypodium distachyon bdi-miR5055 mature miRNA
• Sequence: 11 - UCUCGCUGCUGAGCUCGGCGU - 31
• Evidence: not_experimental

References

1. PubMed ID: 21352554
   Discovery of barley miRNAs through deep sequencing of short reads
   Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U
   BMC Genomics (2011) 12:129