miRBase entry: osa-MIR5075

Stem-loop osa-MIR5075


Accession
MI0017952
Description
Oryza sativa osa-MIR5075 precursor miRNA

Literature search
2 open access papers mention osa-MIR5075
(2 sentences)

Sequence

4 reads, 6 reads per million, 2 experiments
gucggaggagcgggacgagugcgacgggauggcgaccgucgccggcgacagguuccucgccgugagcggguaccgcacggcgaggcagggcggguucgagcgcgacgccgagugguucgacccggcggcgcgcgcguggcgccgccucgaccgcguccgcgccccucccuccgccgcccacgucgugguccgcggccgcgucuggugcaucgagggcgccgccgugauggaguggcucggcucgcgcggcggguggcgcgaggucggccccucccccccgggccucaaggccggcaccgcccgcgccgucugcgucggcggcggcgagcgcgucgucgucaccggcgccaucgaggacuccgacggcggguccggccgccacgcccucuggguguucgacguaaagaccaagaacuggaccgugguucgcccaccuccagaguucgccggauucgccUUCUCCGUCGCCGCCGUCCGCaucugauccg
..(((((((((((.(((.(((((((((((.(((((......(((((((..(((((((((((((..((((...)))))))))))))..((((((......((((((.(((((((.((((.(.(((((((((((((((.(((((.(......).)))))))))).....((((....(((((.(.(((((((...))))))).)))).))...))))))))))))).).).)))).))))))))))))).((((((((.((..(((((((((.........)))))....)))).)).)))))))).))))))(((((((.((((((((.....)))))))).)))))))..(((((.((((.((.(((((((......))).)))).)).)))).)))))......)))).....(((((..((((.....)))).)))))...)))))))..))))).)).)))))).)))))))))).)))..))))

Structure
gu    --   -    g   a   -      -  u     ccgucg       --------------------------------ca    -------------------------------------------------------------ccucgccgugagcggguaccgcacggcgaggca      ----------------------------------------------------guucga      c       g    g c -         gcgcguggcgccgccucgaccgcguccgcgccccucccucc 
  cgga  gga gcgg acg gug cgacgg ga ggcga      ccggcga                                  gguu                                                                                              gggcgg                                                          gcgcga gccgagu guuc a c cggcggcgc                                         g
  ||||  ||| |||| ||| ||| |||||| || |||||      |||||||                                  ||||                                                                                              ||||||                                                          |||||| ||||||| |||| | | |||||||||                                          
  gccu  ucu CGCC UGC CGC GCUGCC CU ccgcu      ggccgcu                                  ccag                                                                                              ucugcc                                                          cgcgcu cggcucg ugag u g gccgccgcg                                         c
--    ag   a    -   -   C      U  U     ----ua       ugagaccuccacccgcuuggugccaggucaagaa    aaaugcagcuugugggucucccgcaccgccggccugggcggcagccucaggagcuaccgcggccacugcugcugcgcgagcggcggcggcugcg      gcgcccgccacggccggaacuccgggcccccccuccccggcuggagcgcggugggcgg      -       g    g a u         ggagcuacguggucugcgccggcgccuggugcugcacccgc 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
This is a predicted homolog of a miRNA identified by Illumina deep sequencing in barley (Hordeum vulgare) [1].

Genome context
Chr11: 7878336-7878823 [-]

Database links

Mature osa-miR5075

Accession MIMAT0020561
Description Oryza sativa osa-miR5075 mature miRNA
Sequence 458 - UUCUCCGUCGCCGCCGUCCGC - 478
Evidence not_experimental

References

  1. PubMed ID: 21352554
    Discovery of barley miRNAs through deep sequencing of short reads
    Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U
    BMC Genomics (2011) 12:129