Stem-loop bdi-MIR5063

Accession

MI0017961

Description

Brachypodium distachyon bdi-MIR5063 precursor miRNA

Sequence

uuucuuguaaugcccggucuucuugcaguggaggcauguaucuuuaUCCACUGGAAAAGGCUUUUGCUaaugcugaug
......(((..((..((((((.((.(((((((..............))))))).))))))))...))...))).....

Structure

uuucuu   -au  -cc      c  g       ggcaug 
      gua   gc   ggucuu uu cagugga      u
      |||   ||   |||||| || |||||||       
      cgu   CG   UCGGAA AA GUCACCU      a
-guagu   aaU  UUU      -  G       auuucu 

Annotation confidence Not enough data

Comments

This is a predicted homolog of a miRNA identified by Illumina deep sequencing in barley (Hordeum vulgare) [1].

Genome context

1: 34157655-34157732 [-]

Mature bdi-miR5063

• Accession: MIMAT0020570
• Description: Brachypodium distachyon bdi-miR5063 mature miRNA
• Sequence: 47 - UCCACUGGAAAAGGCUUUUGCU - 68
• Evidence: not_experimental

References

1. PubMed ID: 21352554
   Discovery of barley miRNAs through deep sequencing of short reads
   Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U
   BMC Genomics (2011) 12:129