Stem-loop bdi-MIR5068

Accession

MI0017968

Description

Brachypodium distachyon bdi-MIR5068 precursor miRNA

Sequence

cuucguacccAUCGGGUAGAGCGGGUAUGGGUAUgggaaugcauaacccauacccuuuuacccgauuacccguaua
....((((..(((((((((((.(((((((((((((......))).))))))))))))))))))))).....)))).

Structure

cuuc    ---cc           C          -   gg 
    guac     AUCGGGUAGAG GGGUAUGGGU AUg  a
    ||||     ||||||||||| |||||||||| |||   
    uaug     uagcccauuuu cccauaccca uac  a
---a    cccau           -          a   gu 

Annotation confidence Not enough data

Comments

This is a predicted homolog of a miRNA identified by Illumina deep sequencing in barley (Hordeum vulgare) [1].

Genome context

3: 25092263-25092338 [+]

Mature bdi-miR5068

• Accession: MIMAT0020577
• Description: Brachypodium distachyon bdi-miR5068 mature miRNA
• Sequence: 11 - AUCGGGUAGAGCGGGUAUGGGUAU - 34
• Evidence: not_experimental

References

1. PubMed ID: 21352554
   Discovery of barley miRNAs through deep sequencing of short reads
   Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U
   BMC Genomics (2011) 12:129