Stem-loop sequence osa-MIR5083

Accession

MI0017974 (change log)

Description

Oryza sativa miR5083 stem-loop

Literature search

5 open access papers mention osa-MIR5083
(12 sentences)

Stem-loop

   ------------------------------------------------------uccuggcaguucuucagauaaucagauuuguccaugagguuucaacuguugcauuccauuguugaguuuuauucuguuugcguuucuguuuguuuuugucau        -cuga    -     gu  -u  -   aaaaauaccuac     -u  u       u 
5'                                                                                                                                                             ggaucugg     uugg aggcu  ga  ga cca            cuauu  uc gagggau c
                                                                                                                                                               ||||||||     |||| |||||  ||  || |||            |||||  || |||||||  
3'                                                                                                                                                             cuuagacu     aacc uccga  cu  cu ggu            gauag  ag cuuccug c
   uacagacucaacuagucuauuaacaucagacuuaaaacccaguuguguaugucaaagacacuuuccaauaguaggguaguugacaaugcuuagaacgaacgaaaaucuucuuacguuauaugcuucuguuuagcuuuuucggcuuauguuuugauu        ucuag    g     gu  uc  a   -----aaccaaa     uu  u       a 

Deep sequencing

55 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Comments

This is a predicted homolog of a miRNA identified by Illumina deep sequencing in barley (Hordeum vulgare) [1].

Genome context

• Coordinates (MSU7): Chr1: 41010573-41010952 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0017974

Mature sequence osa-miR5083

• Accession: MIMAT0020583
• Sequence: 351 - agacuacaauuaucugauca - 370
• Deep sequencing: 32 reads, 2 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS0000453F04_39947

References

1. PMID:21352554 "Discovery of barley miRNAs through deep sequencing of short reads" Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U BMC Genomics. 12:129(2011).