miRBase entry: osa-MIR5157b

Stem-loop osa-MIR5157b


Accession
MI0018073
Description
Oryza sativa osa-MIR5157b precursor miRNA
Gene family
MIPF0001316; MIR5157


Sequence

1 reads, 0 reads per million, 1 experiments
gccuuaagAACUUUUUAAUAGCUACAACUUCUcucuuagaaucaacucuucuaagagAGAAGUUGUGGCUAUCAAAAAGUUccugaggcccua
((((((.(((((((((.((((((((((((((((((((((((.......)))))))))))))))))))))))).))))))))).))))))....

Structure
----      a         A                        uc 
    gccuua gAACUUUUU AUAGCUACAACUUCUcucuuagaa  a
    |||||| ||||||||| ||||||||||||||||||||||||  a
    cggagu cUUGAAAAA UAUCGGUGUUGAAGAgagaaucuu  c
aucc      c         C                        cu 


Annotation confidence Not enough data
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Genome context
Chr8: 21489165-21489257 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from osa-MIR5157b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature osa-miR5157b-5p

Accession MIMAT0021109
Description Oryza sativa osa-miR5157b-5p mature miRNA
Sequence 9 - AACUUUUUAAUAGCUACAACUUCU - 32
Evidence experimental
Illumina [1]

Mature osa-miR5157b-3p

Accession MIMAT0021110
Description Oryza sativa osa-miR5157b-3p mature miRNA
Sequence 58 - AGAAGUUGUGGCUAUCAAAAAGUU - 81
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21525786
    Genome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus
    "Chen CJ, liu Q, Zhang YC, Qu LH, Chen YQ, Gautheret D"
    "RNA Biol (2011) 8:538-547