miRBase entry: bdi-MIR827

Stem-loop bdi-MIR827


Accession
MI0018128
Description
Brachypodium distachyon bdi-MIR827 precursor miRNA
Gene family
MIPF0000726; MIR827

Literature search
2 open access papers mention bdi-MIR827
(2 sentences)

Sequence

auugagccgauucaugcagcucugaacuugUUUUGUUGGUUGUCAUCUAACCaucgaucgguccgugcuucggugcuugugccaugauuuugcaucaucacaccggcgauggUUAGAUGACCAUCAGCAAACAuguucgugagacaugccgugcguccugagcu
....(((((((.(((((((((((((((.(((((.((((((.(((((((((((((((.(((((..(((....(((((...............)))))..))))))))))))))))))))))).))))))))))).))))).))).).)).)))).)))..).)))

Structure
auug   - --   u    -  - -   -     u     U      U               a     cc   cuuc     uugugc 
    agc c  gau caug ca g cuc ugaac ugUUU GUUGGU GUCAUCUAACCaucg ucggu  gug    ggugc      c
    ||| |  ||| |||| || | ||| ||||| ||||| |||||| ||||||||||||||| |||||  |||    |||||      a
    ucg g  cug gugc gu c gag gcuug ACAAA CGACUA CAGUAGAUUgguagc ggcca  cac    cuacg      u
----   a uc   c    c  a a   u     u     -      C               -     --   --ua     uuuuag 


Annotation confidence Not enough data
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Genome context
5: 18037481-18037644 [-]

Database links

Mature bdi-miR827-3p

Accession MIMAT0020703
Description Brachypodium distachyon bdi-miR827-3p mature miRNA
Sequence 113 - UUAGAUGACCAUCAGCAAACA - 133
Evidence experimental
Illumina [1,3]

Mature bdi-miR827-5p

Accession MIMAT0027075
Description Brachypodium distachyon bdi-miR827-5p mature miRNA
Sequence 31 - UUUUGUUGGUUGUCAUCUAACC - 52
Evidence experimental
Illumina [3]

References

  1. PubMed ID: 21371551
    Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
    "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
    "Genomics (2011) 97:282-293

  2. PubMed ID: 19772667
    Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response
    Zhang J, Xu Y, Huan Q, Chong K
    BMC Genomics (2009) 10:449

  3. PubMed ID: 23264558
    Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
    "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
    "Mol Plant (2013) 6:423-443