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Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response |
|
|---|---|
| PubMed ID | 19772667 |
| Authors | Zhang J, Xu Y, Huan Q, Chong K |
| Journal | BMC Genomics |
| Volume | 10 |
| Pages | 449 |
| Name | Accession | RPM | Chromosome | Start | End | Strand | Confidence |
|---|---|---|---|---|---|---|---|
| bdi-MIR395a | MI0018081 | None | 4 | 16374432 | 16374612 | + | High |
| bdi-MIR528 | MI0018087 | None | 1 | 73059536 | 73059695 | - | High |
| bdi-MIR395b | MI0018088 | None | 1 | 55440558 | 55440678 | - | High |
| bdi-MIR168 | MI0018098 | None | 3 | 1774700 | 1774835 | - | High |
| bdi-MIR396a | MI0018111 | None | 3 | 59349783 | 59349991 | - | Medium |
| bdi-MIR394 | MI0018115 | None | 3 | 52316372 | 52316571 | - | Low |
| bdi-MIR164a | MI0018118 | None | 2 | 19949322 | 19949514 | - | Medium |
| bdi-MIR393a | MI0018119 | None | 2 | 2001005 | 2001163 | - | - |
| bdi-MIR395c | MI0018127 | None | 5 | 25455997 | 25456122 | + | High |
| bdi-MIR827 | MI0018128 | None | 5 | 18037481 | 18037644 | - | High |
| bdi-MIR5165 | MI0018132 | None | 4 | 33186148 | 33186396 | - | Low |
| bdi-MIR319a | MI0018137 | None | 4 | 31253293 | 31253572 | + | Medium |
| bdi-MIR5176 | MI0018145 | None | 1 | 28306160 | 28306307 | - | High |
| bdi-MIR162 | MI0018213 | None | 3 | 49592002 | 49592134 | + | - |
| bdi-MIR164e | MI0018215 | None | 2 | 26808982 | 26809108 | - | - |
| bdi-MIR164f | MI0018216 | None | 2 | 19949341 | 19949501 | + | High |
| bdi-MIR395m | MI0018219 | None | 1 | 55440156 | 55440250 | - | - |
| bdi-MIR395e | MI0018220 | None | 5 | 25455195 | 25455344 | + | High |
| bdi-MIR395f | MI0018221 | None | 5 | 25455426 | 25455521 | + | High |
| bdi-MIR395g | MI0018222 | None | 5 | 25455723 | 25455811 | + | High |
| bdi-MIR395h | MI0018223 | None | 5 | 25455882 | 25455957 | + | High |
| bdi-MIR395j | MI0018224 | None | 5 | 25456151 | 25456238 | + | High |
| bdi-MIR395k | MI0018225 | None | 5 | 25456290 | 25456375 | + | High |
| bdi-MIR395l | MI0018226 | None | 5 | 25456562 | 25456657 | + | High |
| bdi-MIR395n | MI0018227 | None | 5 | 25457116 | 25457205 | + | High |
| bdi-MIR529 | MI0018229 | None | 3 | 44898509 | 44898615 | + | High |
| bdi-MIR5198 | MI0018230 | None | 1 | 3141686 | 3141778 | + | High |
| bdi-MIR5199 | MI0018231 | None | 1 | 42791417 | 42791560 | - | Low |
| bdi-MIR5200c | MI0018232 | None | 1 | 47483433 | 47483519 | - | - |
| bdi-MIR5201 | MI0018233 | None | 2 | 42461428 | 42461517 | - | Medium |
| bdi-MIR5202 | MI0018234 | None | 1 | 28904144 | 28904243 | - | Low |
| bdi-MIR5181d | MI0018235 | None | 3 | 14779421 | 14779487 | - | Low |
| bdi-MIR319b | MI0018236 | None | 2 | 45992390 | 45992579 | - | - |
| bdi-MIR390b | MI0018217 | None | None | None | Low | ||
| bdi-MIR396f | MI0018237 | None | None | None | Low | ||
| bdi-MIR398c | MI0018228 | None | None | None | Low | ||
| bdi-MIR164d | MI0018214 | None | None | None | Low | ||
| bdi-MIR395i | MI0018218 | None | None | None | Low | ||
| osa-MIR156a | MI0000653 | 257272 | 1 | 22524147 | 22524246 | - | High |
| osa-MIR156b | MI0000654 | 258339 | 1 | 4666341 | 4666516 | + | High |
| osa-MIR156c | MI0000655 | 258287 | 1 | 4665975 | 4666123 | + | High |
| osa-MIR156d | MI0000656 | 375099 | 2 | 4512884 | 4513012 | - | High |
| osa-MIR156e | MI0000657 | 257257 | 4 | 25026327 | 25026430 | - | High |
| osa-MIR156f | MI0000658 | 374943 | 8 | 21478230 | 21478415 | + | High |
| osa-MIR156g | MI0000659 | 258296 | 9 | 15065253 | 15065368 | + | High |
| osa-MIR156h | MI0000660 | 374943 | 8 | 21491232 | 21491417 | + | High |
| osa-MIR156i | MI0000661 | 257274 | 2 | 24119995 | 24120084 | - | High |
| osa-MIR156j | MI0000662 | 374978 | 6 | 26554795 | 26554959 | + | High |
| osa-MIR160a | MI0000663 | 392 | 2 | 3511585 | 3511672 | - | High |
| osa-MIR160b | MI0000664 | 392 | 6 | 28081020 | 28081158 | + | High |
| osa-MIR160c | MI0000665 | 321 | 8 | 1707568 | 1707666 | + | High |
| osa-MIR160d | MI0000666 | 299 | 3 | 32454988 | 32455129 | + | High |
| osa-MIR162a | MI0000667 | 361 | 2 | 23605799 | 23605969 | + | High |
| osa-MIR164a | MI0000668 | 1892 | 7 | 28523341 | 28523496 | - | High |
| osa-MIR164b | MI0000669 | 1921 | 5 | 15896163 | 15896271 | - | High |
| osa-MIR166a | MI0000670 | 19323 | 10 | 19987135 | 19987279 | + | High |
| osa-MIR166b | MI0000671 | 19371 | 6 | 30327084 | 30327289 | - | High |
| osa-MIR166c | MI0000672 | 19151 | 3 | 3487788 | 3487912 | + | High |
| osa-MIR166d | MI0000673 | 19377 | 2 | 26130059 | 26130183 | + | High |
| osa-MIR166e | MI0000674 | 36 | 3 | 765724 | 765860 | + | High |
| osa-MIR166f | MI0000675 | 19281 | 10 | 14483290 | 14483396 | - | High |
| osa-MIR167a | MI0000676 | 55831 | 12 | 25476808 | 25476948 | + | High |
| osa-MIR167b | MI0000677 | 55818 | 3 | 30546928 | 30547090 | - | High |
| osa-MIR167c | MI0000678 | 55830 | 3 | 33130619 | 33130781 | + | High |
| osa-MIR169a | MI0000679 | 3953 | 1 | 8729104 | 8729276 | + | Medium |
| osa-MIR171a | MI0000680 | 7 | 6 | 25891132 | 25891227 | + | High |
| osa-MIR393a | MI0001026 | 98 | 1 | 2309149 | 2309263 | - | High |
| osa-MIR394 | MI0001027 | 78 | 2 | 27148154 | 27148263 | + | High |
| osa-MIR395b | MI0001028 | 31 | 4 | 31805334 | 31805419 | - | Medium |
| osa-MIR395d | MI0001029 | 22 | 4 | 31805055 | 31805142 | - | High |
| osa-MIR395e | MI0001030 | 20 | 4 | 31804912 | 31804999 | - | High |
| osa-MIR395g | MI0001031 | 19 | 4 | 31804633 | 31804718 | - | High |
| osa-MIR395h | MI0001032 | 20 | 8 | 3299144 | 3299255 | + | High |
| osa-MIR395i | MI0001033 | 19 | 8 | 3299319 | 3299417 | + | High |
| osa-MIR395j | MI0001034 | 20 | 8 | 3299479 | 3299590 | + | High |
| osa-MIR395k | MI0001035 | 19 | 8 | 3299652 | 3299750 | + | High |
| osa-MIR395l | MI0001036 | 17 | 8 | 3299997 | 3300090 | + | High |
| osa-MIR395s | MI0001037 | 22 | 4 | 32622943 | 32623028 | + | - |
| osa-MIR395t | MI0001038 | 0 | 9 | 6607353 | 6607495 | - | Low |
| osa-MIR395c | MI0001041 | 10 | 4 | 31805193 | 31805281 | - | Low |
| osa-MIR395a | MI0001042 | 0 | 4 | 31805494 | 31805635 | - | High |
| osa-MIR395f | MI0001043 | 0 | 4 | 31804774 | 31804855 | - | Low |
| osa-MIR395u | MI0001044 | 0 | 9 | 6606701 | 6606786 | - | - |
| osa-MIR396a | MI0001046 | 97 | 2 | 34280384 | 34280537 | + | High |
| osa-MIR396b | MI0001047 | 100 | 6 | 3669649 | 3669764 | + | High |
| osa-MIR396c | MI0001048 | 280 | 2 | 34287873 | 34288013 | - | High |
| osa-MIR397a | MI0001049 | 361 | 6 | 28489785 | 28489898 | + | High |
| osa-MIR397b | MI0001050 | 315 | 2 | 3280781 | 3280898 | - | High |
| osa-MIR398a | MI0001051 | 11 | 10 | 9216250 | 9216364 | - | High |
| osa-MIR398b | MI0001052 | 59 | 7 | 14598617 | 14598704 | - | High |
| osa-MIR156k | MI0001090 | 871 | 9 | 18289107 | 18289212 | - | High |
| osa-MIR156l | MI0001091 | 10220 | 5 | 5230609 | 5230764 | + | High |
| osa-MIR319a | MI0001098 | 527 | 1 | 26823282 | 26823472 | - | High |
| osa-MIR319b | MI0001099 | 227 | 1 | 6677570 | 6677766 | - | High |
| osa-MIR160e | MI0001100 | 284 | 7 | 2216761 | 2216874 | - | High |
| osa-MIR160f | MI0001101 | 73 | 8 | 24396882 | 24396981 | + | High |
| osa-MIR162b | MI0001102 | 47 | 4 | 24405899 | 24406032 | + | High |
| osa-MIR164c | MI0001103 | 8 | 5 | 17327440 | 17327558 | + | High |
| osa-MIR164d | MI0001104 | 2213 | 2 | 33143567 | 33143660 | - | High |
| osa-MIR164e | MI0001105 | 1894 | 3 | 10542157 | 10542288 | + | High |
| osa-MIR166k | MI0001107 | 1477 | 2 | 32435003 | 32435129 | - | High |
| osa-MIR166l | MI0001108 | 1522 | 9 | 16951817 | 16951933 | + | High |
| osa-MIR167d | MI0001109 | 56522 | 7 | 4166295 | 4166404 | - | High |
| osa-MIR167e | MI0001110 | 56102 | 2 | 3742241 | 3742513 | - | High |
| osa-MIR167f | MI0001111 | 56422 | 10 | 14723044 | 14723156 | - | High |
| osa-MIR167g | MI0001112 | 56505 | 3 | 3347682 | 3347763 | + | High |
| osa-MIR167h | MI0001113 | 56418 | 12 | 25480618 | 25480737 | + | High |
| osa-MIR167i | MI0001114 | 56192 | 6 | 27674749 | 27674949 | + | High |
| osa-MIR168a | MI0001115 | 282915 | 2 | 1553154 | 1553240 | - | High |
| osa-MIR168b | MI0001116 | 1 | 2 | 27336428 | 27336533 | + | - |
| osa-MIR169b | MI0001117 | 3267 | 6 | 27295908 | 27296035 | - | High |
| osa-MIR169c | MI0001118 | 3454 | 4 | 30712338 | 30712449 | - | High |
| osa-MIR169d | MI0001119 | 1 | 9 | 14620382 | 14620484 | - | - |
| osa-MIR169e | MI0001120 | 804 | 2 | 31205866 | 31205997 | - | High |
| osa-MIR169f | MI0001121 | 845 | 2 | 18558299 | 18558512 | - | High |
| osa-MIR169g | MI0001122 | 1008 | 4 | 19420077 | 19420202 | + | High |
| osa-MIR169h | MI0001123 | 1003 | 8 | 26807349 | 26807470 | + | High |
| osa-MIR169i | MI0001124 | 1053 | 8 | 26803116 | 26803291 | + | High |
| osa-MIR169j | MI0001125 | 1011 | 9 | 19788861 | 19788985 | + | High |
| osa-MIR169k | MI0001126 | 1016 | 9 | 19792133 | 19792288 | + | High |
| osa-MIR169l | MI0001127 | 1003 | 8 | 26817488 | 26817595 | + | High |
| osa-MIR169m | MI0001128 | 1012 | 8 | 26813897 | 26814034 | + | High |
| osa-MIR169n | MI0001129 | 82 | 11 | 6085252 | 6085428 | - | High |
| osa-MIR169o | MI0001130 | 82 | 11 | 6081528 | 6081700 | - | High |
| osa-MIR169p | MI0001131 | 0 | 8 | 7641327 | 7641452 | - | Low |
| osa-MIR169q | MI0001132 | None | 8 | 26817488 | 26817595 | - | High |
| osa-MIR171b | MI0001133 | 363 | 8 | 5369153 | 5369252 | + | Medium |
| osa-MIR171c | MI0001134 | 391 | 4 | 31713472 | 31713570 | - | High |
| osa-MIR171d | MI0001135 | 369 | 10 | 21237313 | 21237447 | + | High |
| osa-MIR171e | MI0001136 | 369 | 3 | 1970487 | 1970605 | + | High |
| osa-MIR171f | MI0001137 | 354 | 3 | 30027774 | 30027900 | + | High |
| osa-MIR171g | MI0001138 | 9 | 7 | 15636744 | 15636832 | - | High |
| osa-MIR172a | MI0001139 | 3477 | 9 | 22881834 | 22881942 | + | High |
| osa-MIR172b | MI0001140 | 201 | 1 | 42923736 | 42923973 | - | Medium |
| osa-MIR172c | MI0001141 | 199 | 7 | 13111485 | 13111595 | - | High |
| osa-MIR166g | MI0001142 | 19256 | 12 | 18329367 | 18329511 | + | High |
| osa-MIR166h | MI0001143 | 17849 | 2 | 32435174 | 32435292 | - | High |
| osa-MIR166i | MI0001144 | 443 | 3 | 25294953 | 25295097 | + | High |
| osa-MIR171h | MI0001147 | 61 | 4 | 28482456 | 28482556 | + | High |
| osa-MIR393b | MI0001148 | 216 | 4 | 34931876 | 34932007 | - | High |
| osa-MIR172d | MI0001154 | 3505 | 2 | 35143537 | 35143666 | - | High |
| osa-MIR171i | MI0001155 | 92 | 3 | 21191603 | 21191722 | + | High |
| osa-MIR167j | MI0001156 | 56523 | 1 | 32686068 | 32686227 | - | High |
| osa-MIR166m | MI0001157 | 17946 | 8 | 23045356 | 23045555 | + | High |
| osa-MIR166j | MI0001158 | 19511 | 3 | 30392782 | 30392881 | - | - |
| osa-MIR164f | MI0001159 | 1904 | 5 | 23343908 | 23344117 | + | High |
| osa-MIR390 | MI0001690 | 337 | 3 | 34275140 | 34275230 | - | High |
| osa-MIR396e | MI0001703 | 1338 | 4 | 34436820 | 34437003 | + | High |
| osa-MIR528 | MI0003201 | 4611 | 3 | 1667328 | 1667415 | + | High |
| osa-MIR529a | MI0003202 | 331 | 2 | 16227805 | 16227903 | + | High |
| osa-MIR395m | MI0005084 | 17 | 4 | 32621993 | 32622112 | + | High |
| osa-MIR395n | MI0005085 | 33 | 4 | 32622243 | 32622308 | + | High |
| osa-MIR395o | MI0005086 | 1 | 4 | 32622381 | 32622449 | + | - |
| osa-MIR395p | MI0005087 | 21 | 4 | 32622525 | 32622592 | + | - |
| osa-MIR395q | MI0005088 | 21 | 4 | 32622668 | 32622735 | + | High |
| osa-MIR395v | MI0005090 | 1 | 9 | 6606575 | 6606643 | - | Low |
| osa-MIR395w | MI0005091 | 0 | 9 | 6606291 | 6606359 | - | - |
| osa-MIR395r | MI0005092 | 17 | 4 | 32622811 | 32622878 | + | - |
| osa-MIR529b | MI0005804 | 306 | 4 | 15883024 | 15883161 | + | High |
| osa-MIR169r | MI0006973 | 69 | 3 | 35782416 | 35782544 | + | High |
| osa-MIR827 | MI0010490 | 478 | 2 | 23901168 | 23901284 | - | - |
| osa-MIR396f | MI0010563 | 1410 | 2 | 35636546 | 35636721 | - | High |
| bdi-MIR171a | MI0011559 | None | 3 | 52059037 | 52059156 | - | - |
| bdi-MIR167a | MI0011561 | None | 1 | 6349045 | 6349135 | + | - |
| bdi-MIR397a | MI0011565 | None | 3 | 3149697 | 3149820 | - | Medium |
| bdi-MIR156a | MI0011566 | None | 4 | 39473438 | 39473584 | + | - |
| bdi-MIR172d | MI0011567 | None | 2 | 38183339 | 38183431 | - | - |
| bdi-MIR166a | MI0011570 | None | 1 | 6574374 | 6574493 | + | High |
| bdi-MIR171c | MI0011571 | None | 5 | 24711141 | 24711226 | - | Medium |
| bdi-MIR169b | MI0011574 | None | 1 | 27159120 | 27159225 | - | - |
| osa-MIR396g | MI0013047 | 1122 | 6 | 5300630 | 5300810 | - | Low |
| osa-MIR396h | MI0013048 | 1122 | 2 | 32841661 | 32841801 | + | Low |
| osa-MIR396d | MI0013049 | 1542 | 4 | 30320096 | 30320216 | + | - |
| osa-MIR395x | MI0013350 | 1 | 4 | 32623067 | 32623162 | + | Low |
| osa-MIR395y | MI0013351 | 25 | 8 | 3299815 | 3299924 | + | High |
| bdi-MIR169d | MI0018079 | None | 4 | 26242409 | 26242595 | + | High |
| bdi-MIR169i | MI0018080 | None | 4 | 44509037 | 44509211 | + | High |
| bdi-MIR169j | MI0018082 | None | 4 | 44513754 | 44513936 | + | Medium |
| bdi-MIR166f | MI0018083 | None | 4 | 6090867 | 6091011 | - | - |
| bdi-MIR171b | MI0018084 | None | 1 | 6911133 | 6911296 | + | High |
| bdi-MIR390a | MI0018085 | None | 1 | 2722067 | 2722275 | + | Medium |
| bdi-MIR160a | MI0018086 | None | 1 | 4550703 | 4550877 | - | High |
| bdi-MIR166d | MI0018089 | None | 1 | 71419377 | 71419541 | - | High |
| bdi-MIR167b | MI0018091 | None | 1 | 3770002 | 3770191 | + | High |
| bdi-MIR166b | MI0018092 | None | 1 | 30655617 | 30655860 | - | High |
| bdi-MIR160b | MI0018093 | None | 1 | 28020411 | 28020556 | - | High |
| bdi-MIR164b | MI0018094 | None | 1 | 14544140 | 14544348 | + | High |
| bdi-MIR167c | MI0018095 | None | 1 | 54067075 | 54067233 | + | High |
| bdi-MIR396d | MI0018096 | None | 1 | 46677004 | 46677155 | - | High |
| bdi-MIR169k | MI0018097 | None | 1 | 1175425 | 1175598 | + | High |
| bdi-MIR160c | MI0018100 | None | 3 | 3414575 | 3414722 | - | High |
| bdi-MIR396c | MI0018101 | None | 3 | 54968138 | 54968290 | - | High |
| bdi-MIR167d | MI0018102 | None | 3 | 3632405 | 3632608 | - | High |
| bdi-MIR156b | MI0018104 | None | 3 | 39258110 | 39258314 | - | High |
| bdi-MIR169g | MI0018105 | None | 3 | 43444486 | 43444666 | + | Medium |
| bdi-MIR160d | MI0018106 | None | 3 | 12734293 | 12734442 | + | High |
| bdi-MIR160e | MI0018107 | None | 3 | 41554285 | 41554428 | + | Medium |
| bdi-MIR396e | MI0018108 | None | 3 | 54962836 | 54963036 | + | High |
| bdi-MIR156c | MI0018109 | None | 3 | 4336022 | 4336167 | - | High |
| bdi-MIR172a | MI0018110 | None | 3 | 55737301 | 55737453 | - | High |
| bdi-MIR166e | MI0018112 | None | 3 | 51437868 | 51438018 | + | High |
| bdi-MIR166c | MI0018113 | None | 3 | 33098767 | 33098938 | + | High |
| bdi-MIR169e | MI0018114 | None | 3 | 43441526 | 43441689 | + | High |
| bdi-MIR398a | MI0018116 | None | 2 | 35924413 | 35924562 | - | High |
| bdi-MIR172b | MI0018121 | None | 2 | 58915755 | 58916008 | - | - |
| bdi-MIR156d | MI0018122 | None | 5 | 18202182 | 18202332 | - | High |
| bdi-MIR393b | MI0018123 | None | 5 | 27613816 | 27613989 | + | High |
| bdi-MIR169h | MI0018124 | None | 5 | 11563834 | 11563997 | - | High |
| bdi-MIR396b | MI0018125 | None | 5 | 27112463 | 27112651 | + | Medium |
| bdi-MIR169c | MI0018126 | None | 5 | 23763870 | 23764020 | - | High |
| bdi-MIR166g | MI0018135 | None | 4 | 37627843 | 37628050 | + | High |
| bdi-MIR395d | MI0018147 | None | 3 | 14764296 | 14764443 | - | High |
| bdi-MIR398b | MI0018150 | None | 3 | 21918225 | 21918387 | + | High |
| bdi-MIR164c | MI0018152 | None | 3 | 59107074 | 59107211 | - | Medium |
| bdi-MIR169f | MI0018160 | None | 3 | 16738806 | 16738956 | + | Low |
| bdi-MIR171d | MI0018090 | None | None | None | High | ||
| bdi-MIR169a | MI0018120 | None | None | None | High | ||
| bdi-MIR397b | MI0025288 | None | None | None | High | ||
| bdi-MIR156e | MI0025290 | None | 2 | 4030451 | 4030583 | + | High |
| bdi-MIR156f | MI0025291 | None | 2 | 4030679 | 4030788 | + | High |
| bdi-MIR156g | MI0025292 | None | 2 | 4030916 | 4031026 | + | High |
| bdi-MIR156h | MI0025293 | None | 3 | 49973597 | 49973704 | - | High |
| bdi-MIR156i | MI0025294 | None | 4 | 36168961 | 36169114 | + | High |
| bdi-MIR166h | MI0025296 | None | 3 | 57427334 | 57427473 | + | High |
| bdi-MIR166i | MI0025297 | None | 3 | 27457696 | 27457817 | - | - |
| bdi-MIR167e | MI0025298 | None | 4 | 1641440 | 1641565 | - | High |
| bdi-MIR395o | MI0025299 | None | 1 | 55440734 | 55440819 | - | High |
| bdi-MIR395p | MI0025300 | None | 5 | 25456430 | 25456518 | + | Medium |
| bdi-MIR156j | MI0029151 | None | 4 | 38856201 | 38856309 | - | - |
| bdi-MIR160f | MI0029153 | None | 5 | 19337418 | 19337548 | - | - |
| bdi-MIR166j | MI0029154 | None | None | None | High | ||
| bdi-MIR167f | MI0029155 | None | 4 | 1643731 | 1643832 | - | High |
| bdi-MIR167g | MI0029156 | None | 1 | 71590930 | 71591103 | - | High |
| bdi-MIR169l | MI0029157 | None | 4 | 35762160 | 35762251 | - | - |
| bdi-MIR169m | MI0029158 | None | 3 | 58636718 | 58636827 | + | - |
| bdi-MIR169n | MI0029159 | None | 1 | 11346973 | 11347080 | - | - |
| bdi-MIR171e | MI0029160 | None | 1 | 30824648 | 30824742 | - | - |
| bdi-MIR171f | MI0029161 | None | 5 | 21672257 | 21672347 | + | High |
| bdi-MIR395q | MI0029162 | None | 5 | 25456843 | 25456926 | + | High |