Stem-loop bdi-MIR395g

Accession

MI0018222

Description

Brachypodium distachyon bdi-MIR395g precursor miRNA

Literature search

3 open access papers mention bdi-MIR395g
(31 sentences)

Sequence

gguguuaccaggaGUUUCCUGCAAACACUUCACGagugccuauuuuaauggguuguugUGAAGUGUUUGGGGGAACUCuugaugucacc
((((.((.((((((((((((.((((((((((((((..((((((....))))))..)))))))))))))))))))))))))).)).))))

Structure

    u  c            G              gu      u 
ggug ua caggaGUUUCCU CAAACACUUCACGa  gccuau u
|||| || |||||||||||| ||||||||||||||  ||||||  
ccac gu guuCUCAAGGGG GUUUGUGAAGUguu  ugggua u
    u  a            -              gu      a 

Annotation confidence Not enough data

Genome context

5: 25455723-25455811 [+]

Clustered miRNAs

10 other miRNAs are < 10 kb from bdi-MIR395g

Mature bdi-miR395g-3p

• Accession: MIMAT0020747
• Description: Brachypodium distachyon bdi-miR395g-3p mature miRNA
• Sequence: 59 - UGAAGUGUUUGGGGGAACUC - 78
• Evidence: experimental ; Illumina [1-2]

Mature bdi-miR395g-5p

• Accession: MIMAT0027091
• Description: Brachypodium distachyon bdi-miR395g-5p mature miRNA
• Sequence: 14 - GUUUCCUGCAAACACUUCACG - 34
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19772667
   Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response
   Zhang J, Xu Y, Huan Q, Chong K
   BMC Genomics (2009) 10:449


2. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443