Stem-loop bdi-MIR164e

Accession

MI0018215

Description

Brachypodium distachyon bdi-MIR164e precursor miRNA

Literature search

3 open access papers mention bdi-MIR164e
(17 sentences)

Sequence

uggugagaaugccccuguUGGAGAAGCAGGGCACGUGCAaagaucggagcacguuucguaugugauguacguaugugcauggaucgcugugcacgcgcuccccuucuccaccauggccuucuuacca
(((((((((.(((..((.((((((((..((((.((((((..((((.(.((((((..(((((.....))))).)))))).).))))....)))))).))))..)))))))).)).))).)))))))))

Structure

         u   cc  u        CA    A      --aa    g a      uu     g 
uggugagaa gcc  ug UGGAGAAG  GGGC CGUGCA    gauc g gcacgu  cguau u
||||||||| |||  || ||||||||  |||| ||||||    |||| | ||||||  ||||| g
accauucuu cgg  ac accucuuc  cucg gcacgu    cuag u cgugua  gcaug a
         c   -u  c        cc    c      gucg    g a      -u     u 

Annotation confidence Not enough data

Genome context

2: 26808982-26809108 [-]

Mature bdi-miR164e

• Accession: MIMAT0020740
• Description: Brachypodium distachyon bdi-miR164e mature miRNA
• Sequence: 19 - UGGAGAAGCAGGGCACGUGCA - 39
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19772667
   Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response
   Zhang J, Xu Y, Huan Q, Chong K
   BMC Genomics (2009) 10:449