Stem-loop bdi-MIR827

Accession

MI0018128

Description

Brachypodium distachyon bdi-MIR827 precursor miRNA

Literature search

2 open access papers mention bdi-MIR827
(2 sentences)

Sequence

auugagccgauucaugcagcucugaacuugUUUUGUUGGUUGUCAUCUAACCaucgaucgguccgugcuucggugcuugugccaugauuuugcaucaucacaccggcgauggUUAGAUGACCAUCAGCAAACAuguucgugagacaugccgugcguccugagcu
....(((((((.(((((((((((((((.(((((.((((((.(((((((((((((((.(((((..(((....(((((...............)))))..))))))))))))))))))))))).))))))))))).))))).))).).)).)))).)))..).)))

Structure

auug   - --   u    -  - -   -     u     U      U               a     cc   cuuc     uugugc 
    agc c  gau caug ca g cuc ugaac ugUUU GUUGGU GUCAUCUAACCaucg ucggu  gug    ggugc      c
    ||| |  ||| |||| || | ||| ||||| ||||| |||||| ||||||||||||||| |||||  |||    |||||      a
    ucg g  cug gugc gu c gag gcuug ACAAA CGACUA CAGUAGAUUgguagc ggcca  cac    cuacg      u
----   a uc   c    c  a a   u     u     -      C               -     --   --ua     uuuuag 

Annotation confidence Not enough data

Genome context

5: 18037481-18037644 [-]

Mature bdi-miR827-3p

• Accession: MIMAT0020703
• Description: Brachypodium distachyon bdi-miR827-3p mature miRNA
• Sequence: 113 - UUAGAUGACCAUCAGCAAACA - 133
• Evidence: experimental ; Illumina [1,3]

Mature bdi-miR827-5p

• Accession: MIMAT0027075
• Description: Brachypodium distachyon bdi-miR827-5p mature miRNA
• Sequence: 31 - UUUUGUUGGUUGUCAUCUAACC - 52
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293


2. PubMed ID: 19772667
   Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response
   Zhang J, Xu Y, Huan Q, Chong K
   BMC Genomics (2009) 10:449


3. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443