Stem-loop osa-MIR529b

Accession

MI0005804

Description

Oryza sativa osa-MIR529b precursor miRNA

Literature search

25 open access papers mention osa-MIR529b
(91 sentences)

Sequence

352369 reads, 1286.0 reads per million, 135 experiments

aucgugaaggcuaaauggAGAAGAGAGAGAGUACAGCUUugggcgguuuaguuguuagaugguggaaguacuugcgacgccuacuacccuuuucaccaagGCUGUACGCUCCCUCUUCUUCucuuagcuuuuuaugau
((((((((((((((..(((((((((.(((.((((((((((((..(((.(((.((((.(..((((....))))..))))).)))..))).......)))))))))))).))).)))))))))..))))).)))))))))

Structure

         -     au         A   A            -----gc   -u   u    a au    g 
aucgugaag gcuaa  ggAGAAGAG GAG GUACAGCUUugg       ggu  uag uguu g  ggug a
||||||||| |||||  ||||||||| ||| ||||||||||||       |||  ||| |||| |  ||||  
uaguauuuu cgauu  CUUCUUCUC CUC CAUGUCGgaacc       cca  auc gcag c  ucau a
         u     cu         C   G            acuuuuc   uc   c    - gu    g 

Annotation confidence High

Genome context

4: 15883024-15883161 [+]

Mature osa-miR529b-5p

• Accession: MIMAT0005015
• Description: Oryza sativa osa-miR529b-5p mature miRNA
• Sequence: 19 - AGAAGAGAGAGAGUACAGCUU - 39
• Evidence: experimental ; cloned [1], 454 [2]

Mature osa-miR529b-3p

• Accession: MIMAT0056024
• Description: Oryza sativa osa-miR529b-3p mature miRNA
• Sequence: 101 - GCUGUACGCUCCCUCUUCUUC - 121
• Evidence: experimental ; unknown

References

1. PubMed ID: 17635765
   MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development
   "Lu S, Sun YH, Amerson H, Chiang VL"
   "Plant J (2007) 51:1077-1098


2. PubMed ID: 18687877
   A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
   "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
   "Genome Res (2008) 18:1456-1465