Accession
MI0000677
Description
Oryza sativa
osa-MIR167b precursor miRNA
Literature search
83 open access papers mention osa-MIR167b
(250 sentences)
(250 sentences)
Sequence
11959269
reads,
32551.0
reads per million, 142 experiments
gugcccaagagaaagcgUGAAGCUGCCAGCAUGAUCUAacuugcagacaagaaaucagcucagcucgcugguuucgaacaggaaggcggcuagcugaggcuucuucugaguacgugaugguuagAUCAUGCUGUGACAGUUUCACUccuucccuguugggcac
((((((((.((.(((.(((((((((((((((((((((((((..(((((.((((.....(((((((.((((.((((......)))).)))).))))))).....))))..)).).))..))))))))))))))).).)))))))))..)))..)).))))))))
((((((((.((.(((.(((((((((((((((((((((((((..(((((.((((.....(((((((.((((.((((......)))).)))).))))))).....))))..)).).))..))))))))))))))).).)))))))))..)))..)).))))))))
Structure
g -a -c - - ug - - -a aucag c g ga
gugcccaa ag aag gUGAAGCUG C CAGCAUGAUCUAacu ca g ac agaa cucagcu gcug uuuc a
|||||||| || ||| ||||||||| | ||||||||||||||| || | || |||| ||||||| |||| ||||
cacggguu uc uuc CACUUUGAC G GUCGUACUAgauugg gu c ug ucuu gagucga cggc gaag c
g cc cU A U ua g a ag cuucg u g ga
Annotation confidence
High
Do you think this miRNA is real?
Comments
The stem-loop sequence represented here is predicted based on homology to miRNAs cloned from Arabidopsis [1]. Its expression has not been verified in rice.
Genome context
3: 30546928-30547090 [-]
Database links
Mature osa-miR167b-5p
| Accession | MIMAT0000642 |
| Description | Oryza sativa osa-miR167b-5p mature miRNA |
| Sequence | 18 - UGAAGCUGCCAGCAUGAUCUA - 38 |
| Evidence | not_experimental |
| Database links |
|
Mature osa-miR167b-3p
| Accession | MIMAT0055912 |
| Description | Oryza sativa osa-miR167b-3p mature miRNA |
| Sequence | 125 - AUCAUGCUGUGACAGUUUCACU - 146 |
| Evidence |
experimental
unknown |
References
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