Stem-loop bdi-MIR169i

Accession

MI0018080

Description

Brachypodium distachyon bdi-MIR169i precursor miRNA

Literature search

3 open access papers mention bdi-MIR169i
(27 sentences)

Sequence

8690 reads, 143.0 reads per million, 19 experiments

uggagacgaggagccccuuugcaggcucuaccagccaagaauggcuugccuaUGCCCACGUUCUGUUUCAUCAccacugggcuuaaucuuggagcccuggugAUGGAUGAGAUGUGAUUGUAUGgucaagccaucuuggcuagaagagagauccucgucccccaugcuaggcugc
.((.((((((((...(((....)))((((.(.((((((((.(((((((.((((((.(((((.((..((((((((((..((((((.......))))))))))))))))..)))))))...)))))).))))))))))))))).).))))...)))))))).))...((......))

Structure

------------u  a        gccccuuugcagg    a c        a       c      --C     U  GU          cu      aa 
             gg gacgagga             cucu c agccaaga uggcuug cuaUGC   CACGU CU  UUCAUCAcca  gggcuu  u
             || ||||||||             |||| | |||||||| ||||||| ||||||   ||||| ||  ||||||||||  ||||||  c
             cc cugcuccu             gaga g ucgguucu accgaac gGUAUG   GUGUA GA  AGGUAguggu  cccgag  u
cgucggaucguac  c        ----------aga    a a        -       u      UUA     -  GU          --      gu 

Annotation confidence High

Genome context

4: 44509037-44509211 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bdi-MIR169i

Mature bdi-miR169i-5p

• Accession: MIMAT0020655
• Description: Brachypodium distachyon bdi-miR169i-5p mature miRNA
• Sequence: 53 - UGCCCACGUUCUGUUUCAUCA - 73
• Evidence: not_experimental

Mature bdi-miR169i-3p

• Accession: MIMAT0056991
• Description: Brachypodium distachyon bdi-miR169i-3p mature miRNA
• Sequence: 103 - AUGGAUGAGAUGUGAUUGUAUG - 124
• Evidence: experimental ; unknown

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293