Stem-loop bdi-MIR169g

Accession

MI0018105

Description

Brachypodium distachyon bdi-MIR169g precursor miRNA

Literature search

3 open access papers mention bdi-MIR169g
(27 sentences)

Sequence

3753 reads, 49.0 reads per million, 20 experiments

gguguugcgugggcagagaagaagccuuacauggcagcaaggggcuuaucucugaUAGCCAAGGAUGACUUGCCUGUgucauacuucaaggcuuggcaacaugaugcaugagccuuuguuguagucucaUAGGCAGUCUCCUUGGCUAGCcugaguggcucuugcggcucaugccaggcug
......((.(((.((((((..(((((((...((....)).))))))).)))))).((((((((((.((((.(((((((...(((..((((((((.(((......)))..))))).)))..)))....)))))))))))))))))))))...(((((.((....)).)))))..))).))..

Structure

gguguu  g   gcagagaagaagccuuacauggcagcaaggggcuuaucucuga          U    U       -uca   uu   -     -g   ac 
      gc ugg                                           UAGCCAAGGA GACU GCCUGUg    uac  caa ggcuu  gca  a
      || |||                                           |||||||||| |||| |||||||    |||  ||| |||||  |||   
      cg acc                                           AUCGGUUCCU CUGA CGGAUac    aug  guu ccgag  cgu  u
----gu  g   ------------------guacucggcguucucggugagucCG          -    -       ucug   uu   u     ua   ag 

Annotation confidence Medium

Genome context

3: 43444486-43444666 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bdi-MIR169g

Mature bdi-miR169g-5p

• Accession: MIMAT0020680
• Description: Brachypodium distachyon bdi-miR169g-5p mature miRNA
• Sequence: 56 - UAGCCAAGGAUGACUUGCCUGU - 77
• Evidence: not_experimental

Mature bdi-miR169g-3p

• Accession: MIMAT0056999
• Description: Brachypodium distachyon bdi-miR169g-3p mature miRNA
• Sequence: 130 - UAGGCAGUCUCCUUGGCUAGC - 150
• Evidence: experimental ; unknown

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293