Stem-loop bdi-MIR395b

Accession

MI0018088

Description

Brachypodium distachyon bdi-MIR395b precursor miRNA

Literature search

3 open access papers mention bdi-MIR395b
(28 sentences)

Sequence

205596 reads, 1851.0 reads per million, 21 experiments

cggaccacguuugguauuaccaugaGUUCCCUGCAAGCACUUCACGaggcccaauuaugauggcuacugUGAAGUGUUUGGGGGAACUCUuggugucaccaagcuuacacaaauaaaaaga
........(((((((..(((((.(((((((((.(((((((((((((.((((..........))))..)))))))))))))))))))))).)))))..))))))).................

Structure

---------cggaccac       au     u         G             -a    caau 
                 guuuggu  uacca gaGUUCCCU CAAGCACUUCACG  ggcc    u
                 |||||||  ||||| ||||||||| |||||||||||||  ||||     
                 cgaacca  guggu CUCAAGGGG GUUUGUGAAGUgu  ucgg    a
agaaaaauaaacacauu       cu     U         -             ca    uagu 

Annotation confidence High

Genome context

1: 55440558-55440678 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from bdi-MIR395b

Mature bdi-miR395b-5p

• Accession: MIMAT0056995
• Description: Brachypodium distachyon bdi-miR395b-5p mature miRNA
• Sequence: 26 - GUUCCCUGCAAGCACUUCACG - 46
• Evidence: experimental ; unknown

Mature bdi-miR395b-3p

• Accession: MIMAT0020663
• Description: Brachypodium distachyon bdi-miR395b-3p mature miRNA
• Sequence: 70 - UGAAGUGUUUGGGGGAACUCU - 90
• Evidence: experimental ; Illumina [1,3]

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293


2. PubMed ID: 19772667
   Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response
   Zhang J, Xu Y, Huan Q, Chong K
   BMC Genomics (2009) 10:449


3. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443