Stem-loop bdi-MIR164c

Accession

MI0018152

Description

Brachypodium distachyon bdi-MIR164c precursor miRNA

Literature search

3 open access papers mention bdi-MIR164c
(17 sentences)

Sequence

317091 reads, 6466.0 reads per million, 18 experiments

augauuugaggagagggggcgagcaaaccuugcUGGAGAAGCAGGGCACGUGCuugaccggucggccggagccggguugcagcaUGUGCGCUCCUUCUCCAGCAUGgcuucucgccccgucgaccggcguucggcagg
.........((.((.((((((((.((.((.(((((((((((.((.((((((((((((((...((((....))))))))).))))))))).)).))))))))))).)).)))))))))).))..)).((.....))...

Structure

----augauuuga  -a  g        c  a  u           C  G         -     ggu    c 
             gg  ga ggggcgag aa cc ugcUGGAGAAG AG GCACGUGCu ugacc   cggc g
             ||  || |||||||| || || ||||||||||| || ||||||||| |||||   ||||  
             cc  cu ccccgcuc uu gG ACGACCUCUUC UC CGUGUacga guugg   gccg g
ggacggcuugcgg  ag  g        -  c  U           C  G         c     ---    a 

Annotation confidence Medium

Genome context

3: 59107074-59107211 [-]

Mature bdi-miR164c-5p

• Accession: MIMAT0020728
• Description: Brachypodium distachyon bdi-miR164c-5p mature miRNA
• Sequence: 34 - UGGAGAAGCAGGGCACGUGC - 53
• Evidence: experimental ; Illumina [2]

Mature bdi-miR164c-3p

• Accession: MIMAT0027084
• Description: Brachypodium distachyon bdi-miR164c-3p mature miRNA
• Sequence: 85 - UGUGCGCUCCUUCUCCAGCAUG - 106
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293


2. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443