Stem-loop bdi-MIR5181d

Accession

MI0018235

Description

Brachypodium distachyon bdi-MIR5181d precursor miRNA

Literature search

1 open access papers mention bdi-MIR5181d
(2 sentences)

Sequence

825 reads, 8.0 reads per million, 21 experiments

uuacUCCCUCCGGUCCAUAAUAAauauguacggaguacuuauACUUAUUAUGGACCGGAGGGAgcaa
...(((((((((((((((((((((((.((((...)))).)))..))))))))))))))))))))...

Structure

uua                    --   u    g 
   cUCCCUCCGGUCCAUAAUAA  aua guac  
   ||||||||||||||||||||  ||| |||| g
   gAGGGAGGCCAGGUAUUAUU  uau caug  
aac                    CA   u    a 

Annotation confidence Low

Genome context

3: 14779421-14779487 [-]

Mature bdi-miR5181d-5p

• Accession: MIMAT0057025
• Description: Brachypodium distachyon bdi-miR5181d-5p mature miRNA
• Sequence: 5 - UCCCUCCGGUCCAUAAUAA - 23
• Evidence: experimental ; unknown

Mature bdi-miR5181d-3p

• Accession: MIMAT0020760
• Description: Brachypodium distachyon bdi-miR5181d-3p mature miRNA
• Sequence: 43 - ACUUAUUAUGGACCGGAGGGA - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19772667
   Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response
   Zhang J, Xu Y, Huan Q, Chong K
   BMC Genomics (2009) 10:449