Stem-loop bdi-MIR397a

Accession

MI0011565

Description

Brachypodium distachyon bdi-MIR397a precursor miRNA

Literature search

2 open access papers mention bdi-MIR397a
(11 sentences)

Sequence

113358 reads, 1194.0 reads per million, 21 experiments

gaagaggcgcaaaggcaUCAUUGAGUGCAGCGUUGAUGaacaggggccaggcgaccggcggccgguccgguucgguUCACCGGCGCUGCACACAGUgacgcccuugcauucucuggcccgauuc
..(((((.((((.(((.((((((.(((((((((((.(((((..(((((..(.((((((...)))))))))))).))))).))))))))))).)))))).))).))))..)))))..........

Structure

--------ga     -c    a   a      A           A     ag     ag c      c 
          agagg  gcaa ggc UCAUUG GUGCAGCGUUG UGaac  gggcc  g gaccgg  
          |||||  |||| ||| |||||| ||||||||||| |||||  |||||  | |||||| g
          ucucu  cguu ccg agUGAC CACGUCGCGGC ACUug  cuugg  c cuggcc  
cuuagcccgg     ua    c   c      A           C     -g     -- -      g 

Annotation confidence Medium

Genome context

3: 3149697-3149820 [-]

Mature bdi-miR397a-5p

• Accession: MIMAT0012180
• Description: Brachypodium distachyon bdi-miR397a-5p mature miRNA
• Sequence: 18 - UCAUUGAGUGCAGCGUUGAUG - 38
• Evidence: not_experimental

Mature bdi-miR397a-3p

• Accession: MIMAT0056981
• Description: Brachypodium distachyon bdi-miR397a-3p mature miRNA
• Sequence: 77 - UCACCGGCGCUGCACACAGU - 96
• Evidence: experimental ; unknown

References

1. PubMed ID: 19585143
   Conserved microRNAs and their targets in model grass species Brachypodium distachyon
   "Unver T, Budak H"
   "Planta (2009) 230:659-669


2. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293