Stem-loop bdi-MIR390a

Accession

MI0018085

Description

Brachypodium distachyon bdi-MIR390a precursor miRNA

Literature search

3 open access papers mention bdi-MIR390a
(44 sentences)

Sequence

ccaaucgagaucgguaaggaacaauccuugAAGCUCAGGAGGGAUAGCGCCuagguucacugcaaccaacaagagaaccggccaucgauauauacauauauauguccucgaucgaccgaucgaucucuugcugguuccgucgaucuguucguccgaagCGCUAUCUAUCCUGAGCUCCAcgguucguucguucuuaccaugcccacaca
............((((((((((...((.((.(((((((((.(((((((((.((((((.((.(.(((((.(((((((..........((((((((....)))))))).((((((....))))))))))))).)))))).)).))))))(((....)))))))))))).))))))))).)).))...))))...))))))...........

Structure

ccaaucgagauc      ---    aau  u  A         G         ---------C      c  u c     a       -------accggccauc        c 
            gguaag   gaac   cc ug AGCUCAGGA GGAUAGCGC          uagguu ac g aacca caagaga                 gauauaua a
            ||||||   ||||   || || ||||||||| |||||||||          |||||| || | ||||| |||||||                 ||||||||  
            ccauuc   cuug   gg AC UCGAGUCCU UCUAUCGCg          gucuag ug c uuggu guucucu                 cuguauau u
-acacacccgua      uug    cuu  c  C         A         aagccugcuu      c  c -     c       agcuagccagcuagcuc        a 

Annotation confidence Not enough data

Genome context

1: 2722067-2722275 [+]

Mature bdi-miR390a-5p

• Accession: MIMAT0020660
• Description: Brachypodium distachyon bdi-miR390a-5p mature miRNA
• Sequence: 31 - AAGCUCAGGAGGGAUAGCGCC - 51
• Evidence: experimental ; Illumina [2]

Mature bdi-miR390a-3p

• Accession: MIMAT0027043
• Description: Brachypodium distachyon bdi-miR390a-3p mature miRNA
• Sequence: 159 - CGCUAUCUAUCCUGAGCUCCA - 179
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293


2. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443