Stem-loop bdi-MIR390a

Accession

MI0018085

Description

Brachypodium distachyon bdi-MIR390a precursor miRNA

Literature search

3 open access papers mention bdi-MIR390a
(35 sentences)

Sequence

9607 reads, 117.0 reads per million, 21 experiments

ccaaucgagaucgguaaggaacaauccuugAAGCUCAGGAGGGAUAGCGCCUagguucacugcaaccaacaagagaaccggccaucgauauauacauauauauguccucgaucgaccgaucgaucucuugcugguuccgucgaucuguucguccGAAGCGCUAUCUAUCCUGAGCUccacgguucguucguucuuaccaugcccacaca
............((((((((((...((.((.(((((((((.(((((((((.((((((.((.(.(((((.(((((((..........((((((((....)))))))).((((((....))))))))))))).)))))).)).))))))(((....)))))))))))).))))))))).)).))...))))...))))))...........

Structure

ccaaucgagauc      ---    aau  u  A         G         CUagguucacugcaaccaacaagagaaccggccaucgauauauacauauauauguccucgaucgaccgaucgaucucuugcugguuccgucgaucug   g 
            gguaag   gaac   cc ug AGCUCAGGA GGAUAGCGC                                                                                                 uuc u
            ||||||   ||||   || || ||||||||| |||||||||                                                                                                 |||  
            ccauuc   cuug   gg ac UCGAGUCCU UCUAUCGCG                                                                                                 AAG c
-acacacccgua      uug    cuu  c  c         A         -------------------------------------------------------------------------------------------------   c 

Annotation confidence Medium

Genome context

1: 2722067-2722275 [+]

Mature bdi-miR390a-5p

• Accession: MIMAT0020660
• Description: Brachypodium distachyon bdi-miR390a-5p mature miRNA
• Sequence: 31 - AAGCUCAGGAGGGAUAGCGCCU - 52
• Evidence: experimental ; Illumina [2]

Mature bdi-miR390a-3p

• Accession: MIMAT0027043
• Description: Brachypodium distachyon bdi-miR390a-3p mature miRNA
• Sequence: 155 - GAAGCGCUAUCUAUCCUGAGCU - 176
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293


2. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443