Stem-loop bdi-MIR5176

Accession

MI0018145

Description

Brachypodium distachyon bdi-MIR5176 precursor miRNA

Sequence

aguuuauucucuuuucacacguucucucauuuauucUAUGCCAUGUCGUCACAUAUCcuacauggcaauauuuaccaacaugcuauguaggauaUGUGAUGAUGUGGCAUAGAAUgcgaggagagagagcaaacuuguaugugcaaca
(((((.((((((((((...(((..........(((((((((((((((((((((((((((((((((((.............)))))))))))))))))))))))))))))))))))))).)))))))))).))))).............

Structure

-------------     a          aca   ucucucauuu                                   auauu 
             aguuu uucucuuuuc   cgu          auucUAUGCCAUGUCGUCACAUAUCcuacauggca     u
             ||||| ||||||||||   |||          |||||||||||||||||||||||||||||||||||     a
             ucaaa gagagagagg   gcg          UAAGAUACGGUGUAGUAGUGUauaggauguaucgu     c
acaacguguaugu     c          --a   ----------                                   acaac 

Annotation confidence Not enough data

Genome context

1: 28306160-28306307 [-]

Mature bdi-miR5176-5p

• Accession: MIMAT0020720
• Description: Brachypodium distachyon bdi-miR5176-5p mature miRNA
• Sequence: 37 - UAUGCCAUGUCGUCACAUAUC - 57
• Evidence: experimental ; Illumina [1]

Mature bdi-miR5176-3p

• Accession: MIMAT0020721
• Description: Brachypodium distachyon bdi-miR5176-3p mature miRNA
• Sequence: 95 - UGUGAUGAUGUGGCAUAGAAU - 115
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293


2. PubMed ID: 19772667
   Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response
   Zhang J, Xu Y, Huan Q, Chong K
   BMC Genomics (2009) 10:449