Stem-loop bdi-MIR395j

Accession

MI0018224

Description

Brachypodium distachyon bdi-MIR395j precursor miRNA

Literature search

3 open access papers mention bdi-MIR395j
(32 sentences)

Sequence

gguauucucaugaGUUUCCCGCAAGCACUUCACGaggccguuuucugagggcuacugUGAAGUGUUUGGGGGAACUCuuggucucacc
(((....(((.(((((((((.(((((((((((((.((((.((....)).))))..)))))))))))))))))))))).)))....)))

Structure

   auuc   u         G             -a    g  u 
ggu    uca gaGUUUCCC CAAGCACUUCACG  ggcc uu u
|||    ||| ||||||||| |||||||||||||  |||| ||  
cca    ggu CUCAAGGGG GUUUGUGAAGUgu  ucgg ag c
   cucu   u         -             ca    g  u 

Annotation confidence Not enough data

Genome context

5: 25456151-25456238 [+]

Clustered miRNAs

10 other miRNAs are < 10 kb from bdi-MIR395j

Mature bdi-miR395j-3p

• Accession: MIMAT0020749
• Description: Brachypodium distachyon bdi-miR395j-3p mature miRNA
• Sequence: 58 - UGAAGUGUUUGGGGGAACUC - 77
• Evidence: experimental ; Illumina [1-2]

Mature bdi-miR395j-5p

• Accession: MIMAT0027093
• Description: Brachypodium distachyon bdi-miR395j-5p mature miRNA
• Sequence: 14 - GUUUCCCGCAAGCACUUCACG - 34
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19772667
   Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response
   Zhang J, Xu Y, Huan Q, Chong K
   BMC Genomics (2009) 10:449


2. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443