Stem-loop osa-MIR396h

Accession

MI0013048

Description

Oryza sativa osa-MIR396h precursor miRNA

Literature search

54 open access papers mention osa-MIR396h
(135 sentences)

Sequence

5188568 reads, 28155.0 reads per million, 142 experiments

agggcgccggggagGAGGUGGUGGUGGUGGUGGgggcgacgccggcggagguguucgacgcggcggagguggcggaggaggacggcggcggcggcguggccaaggacauuUCCACAGGCUUUCUUGAACGGuucuugccac
..(((((((..((((((((.((((.((((.....(((.((((((.((..(.(((((..(((.((....)).))).....))))).)..)).)))))).))).....)))).))))..))))))))...))))....)))..

Structure

ag   ----    -gg        -G    U    GUGGg   g      g  ga g     ---ga   g  g 
  ggc    gccg   gagGAGGU  GUGG GGUG     ggc acgccg cg  g uguuc     cgc gc g
  |||    ||||   ||||||||  |||| ||||     ||| |||||| ||  | |||||     ||| ||  
  ccg    uGGC   UUCUUUCG  CACC uuac     ccg ugcggc gc  c gcagg     gcg ug a
ca   uucu    AAG        GA    U    aggaa   g      g  gg g     aggag   g  g 

Annotation confidence Low

Genome context

2: 32841661-32841801 [+]

Mature osa-miR396h-5p

• Accession: MIMAT0056149
• Description: Oryza sativa osa-miR396h-5p mature miRNA
• Sequence: 15 - GAGGUGGUGGUGGUGGUGG - 33
• Evidence: experimental ; unknown

Mature osa-miR396h-3p

• Accession: MIMAT0013834
• Description: Oryza sativa osa-miR396h-3p mature miRNA
• Sequence: 111 - UCCACAGGCUUUCUUGAACGG - 131
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19903869
   Rice MicroRNA effector complexes and targets
   "Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y"
   "Plant Cell (2009) 21:3421-3435