Stem-loop bdi-MIR172a

Accession

MI0018110

Description

Brachypodium distachyon bdi-MIR172a precursor miRNA

Literature search

6 open access papers mention bdi-MIR172a
(17 sentences)

Sequence

aggcggcacgcacagucggcgcuugcagguGCAGCACCACCAAGAUUCACAucggguucuccagucguaauuaauuaacgaggaguacaaccaugaugAGAAUCUUGAUGAUGCUGCAUcggcaaccgcucgacuacucaucauaucgucaau
.(((((.......((((((((.((((.(((((((((.((.((((((((.(((((((((((((..((((.........))))))))...)))).))))).)))))))).)).))))))))).)))).))).)))))..........)))))...

Structure

--a     ---cacgcac     -   c    a         C  C        A     -    ---    ag    aau 
   ggcgg          agucg gcg uugc gguGCAGCA CA CAAGAUUC CAucg gguu   cucc  ucgu   u
   |||||          ||||| ||| |||| ||||||||| || |||||||| ||||| ||||   ||||  ||||   a
   cugcu          ucagc cgc aacg cUACGUCGU GU GUUCUAAG guagu ccaa   gagg  agca   a
uaa     auacuacuca     u   c    g         A  A        A     a    cau    --    auu 

Annotation confidence Not enough data

Genome context

3: 55737301-55737453 [-]

Mature bdi-miR172a-3p

• Accession: MIMAT0020685
• Description: Brachypodium distachyon bdi-miR172a-3p mature miRNA
• Sequence: 99 - AGAAUCUUGAUGAUGCUGCAU - 119
• Evidence: experimental ; Illumina [2]

Mature bdi-miR172a-5p

• Accession: MIMAT0027061
• Description: Brachypodium distachyon bdi-miR172a-5p mature miRNA
• Sequence: 31 - GCAGCACCACCAAGAUUCACA - 51
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293


2. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443