Stem-loop bdi-MIR169f

Accession

MI0018160

Description

Brachypodium distachyon bdi-MIR169f precursor miRNA

Literature search

3 open access papers mention bdi-MIR169f
(29 sentences)

Sequence

13198 reads, 290.0 reads per million, 19 experiments

gggccaugcaggacgaggcacagagcaggaugCAGCCAAGGAUGACUUGCCGGccggcuggccggcaaugucgccgccggcgugacaugaugcuugcccggcaaguuugUCCUUGGCUACACCUUGCUCUcugcccaucauguguugcccu
((((.(((((.((.(.((((.((((((((.((.((((((((((((((((((((((....))))))))).)))(((((.(((((......))))).))..)))......)))))))))).)).)))))))).))))).)).))))).)))).

Structure

-    c     g  c a    c        a  C          ------------------------------------   -         g 
 gggc augca ga g ggca agagcagg ug AGCCAAGGAU                                    GAC UUGCCGGcc g
 |||| ||||| || | |||| |||||||| || ||||||||||                                    ||| |||||||||  
 cccg ugugu cu c ccgu UCUCGUUC AC UCGGUUCCUg                                    cug aacggccgg c
u    u     a  a -    c        C  A          uuugaacggcccguucguaguacagugcggccgccg   u         u 

Annotation confidence Low

Genome context

3: 16738806-16738956 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bdi-MIR169f

Mature bdi-miR169f-5p

• Accession: MIMAT0020736
• Description: Brachypodium distachyon bdi-miR169f-5p mature miRNA
• Sequence: 33 - CAGCCAAGGAUGACUUGCCGG - 53
• Evidence: not_experimental

Mature bdi-miR169f-3p

• Accession: MIMAT0057020
• Description: Brachypodium distachyon bdi-miR169f-3p mature miRNA
• Sequence: 110 - UCCUUGGCUACACCUUGCUCU - 130
• Evidence: experimental ; unknown

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293