Stem-loop bdi-MIR164f

Accession

MI0018216

Description

Brachypodium distachyon bdi-MIR164f precursor miRNA

Literature search

4 open access papers mention bdi-MIR164f
(18 sentences)

Sequence

1341 reads, 27.0 reads per million, 17 experiments

aggcgaggcuugcgcggUGGAGAAGAAGGGCACAUGCAugcacacacacgcgcauggccggccgcucgggcgacacgcgcgcccaggccgcggcgcggcacaccggcggcgagcuggaacgaaugCACGUGCCCUGCUUCUCCACCUcgcgcgccucgccu
(((((((((.((((.((((((((((.(((((((.(((((((.(......).)).((((((((((((((((((.(....)))))).))..))))).)))).))(((((.....))))).....))))).))))))).)))))))))).)))).)))))))))

Structure

         u    c          A       A     -----gcacacacacgcgca  -    -     --  -     a a 
aggcgaggc ugcg ggUGGAGAAG AGGGCAC UGCAu                    ug gccg gccgc  uc gggcg c c
||||||||| |||| |||||||||| ||||||| |||||                    || |||| |||||  || ||||| |  
uccgcuccg gcgc CCACCUCUUC UCCCGUG ACgua                    ac cggc cggcg  gg cccgc g g
         c    U          G       C     agcaaggucgagcggcggcc  a    g     cc  a     - c 

Annotation confidence High

Genome context

2: 19949341-19949501 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bdi-MIR164f

Mature bdi-miR164f-5p

• Accession: MIMAT0020741
• Description: Brachypodium distachyon bdi-miR164f-5p mature miRNA
• Sequence: 18 - UGGAGAAGAAGGGCACAUGCA - 38
• Evidence: experimental ; Illumina [1]

Mature bdi-miR164f-3p

• Accession: MIMAT0057021
• Description: Brachypodium distachyon bdi-miR164f-3p mature miRNA
• Sequence: 126 - CACGUGCCCUGCUUCUCCACCU - 147
• Evidence: experimental ; unknown

References

1. PubMed ID: 19772667
   Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response
   Zhang J, Xu Y, Huan Q, Chong K
   BMC Genomics (2009) 10:449