Stem-loop bdi-MIR395a

Accession

MI0018081

Description

Brachypodium distachyon bdi-MIR395a precursor miRNA

Literature search

3 open access papers mention bdi-MIR395a
(33 sentences)

Sequence

114329 reads, 996.0 reads per million, 21 experiments

caggagaugaaugguugguugucaacuggaGUUCUCCUCAAAUCACUUCAGUagcuagcuagcuagcuugugccucauuguuucauugccgcuguuuauaagugugcauggagcuggagagccgugcacagUGAAGUGUUUGGGGGAACUCCggguggcaaccaacaauacugauaucacc
..((.((((....(((((((((((.((((((((((((.((((.(((((((..((((((....))))))((((((((...(((((((.((((((.......)))).)))))))))....)))....))))).))))))))))))))))))))))).)))))))))))........)))).))

Structure

ca  a    ----aaug           a            U    U       GUagcuagcuagcuagcu     ----   -auu       u  -    gu 
  gg gaug        guugguuguca cuggaGUUCUCC CAAA CACUUCA                  ugugc    cuc    guuucau gc cgcu  u
  || ||||        ||||||||||| |||||||||||| |||| |||||||                  |||||    |||    ||||||| || ||||  u
  cc cuau        caaccaacggu ggCCUCAAGGGG GUUU GUGAAGU                  acacg    gag    cgaggua cg guga  a
--  a    agucauaa           g            -    -       -----------------g     ugcc   aggu       -  u    au 

Annotation confidence High

Genome context

4: 16374432-16374612 [+]

Mature bdi-miR395a-5p

• Accession: MIMAT0056992
• Description: Brachypodium distachyon bdi-miR395a-5p mature miRNA
• Sequence: 31 - GUUCUCCUCAAAUCACUUCAGU - 52
• Evidence: experimental ; unknown

Mature bdi-miR395a-3p

• Accession: MIMAT0020656
• Description: Brachypodium distachyon bdi-miR395a-3p mature miRNA
• Sequence: 132 - UGAAGUGUUUGGGGGAACUCC - 152
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293


2. PubMed ID: 19772667
   Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response
   Zhang J, Xu Y, Huan Q, Chong K
   BMC Genomics (2009) 10:449