Stem-loop bdi-MIR168

Accession

MI0018098

Description

Brachypodium distachyon bdi-MIR168 precursor miRNA

Literature search

2 open access papers mention bdi-MIR168
(9 sentences)

Sequence

ugcuccuccccugccgccgccgccucgggcUCGCUUGGUGCAGAUCGGGACccuccgcccgcccccgccgggccggauCCCGCCUUGCACCAAGUGAAUcggagccggcgcagcgacuuuuuuuuacuuaauuccu
..............((((((((.(((.((.(((((((((((((..(((((...(((((((((....).)))).)))))))))..))))))))))))).)).))).)))))..))).....................

Structure

-------ugcuccuccccugc   --     c   g  c             AU     Ccc    -    - c 
                     cgc  cgccg cuc gg UCGCUUGGUGCAG  CGGGA   uccg cccg c c
                     |||  ||||| ||| || |||||||||||||  |||||   |||| |||| |  
                     gcg  gcggc gag cU AGUGAACCACGUU  GCCCu   aggc gggc g c
uccuuaauucauuuuuuuuca   ac     c   g  A             CC     ---    c    c c 

Annotation confidence Not enough data

Genome context

3: 1774700-1774835 [-]

Mature bdi-miR168-5p

• Accession: MIMAT0020673
• Description: Brachypodium distachyon bdi-miR168-5p mature miRNA
• Sequence: 31 - UCGCUUGGUGCAGAUCGGGAC - 51
• Evidence: experimental ; Illumina [1,3]

Mature bdi-miR168-3p

• Accession: MIMAT0027053
• Description: Brachypodium distachyon bdi-miR168-3p mature miRNA
• Sequence: 79 - CCCGCCUUGCACCAAGUGAAU - 99
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293


2. PubMed ID: 19772667
   Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response
   Zhang J, Xu Y, Huan Q, Chong K
   BMC Genomics (2009) 10:449


3. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443