Stem-loop bdi-MIR396d

Accession

MI0018096

Description

Brachypodium distachyon bdi-MIR396d precursor miRNA

Literature search

2 open access papers mention bdi-MIR396d
(4 sentences)

Sequence

134583 reads, 1262.0 reads per million, 21 experiments

uauuggaugcaugcauggcccucuuugcuaucUUCCACAGCUUUCUUGAACUgcaucugcaauggaugcuacuuagcuuaugcuuaacugcaagagugcUGUUCAAUAAAGCUGUGGGAAAuugcagagagagaccaauugggcagcuuaau
....((.(((.....((((.((((((((.((.((((((((((((.((((((.((((((.....))))))......((((.(((......))).))))...)))))).)))))))))))).)).)))))))).).))).....))).))....

Structure

uauu  a   augca   - c        u  c            C      Ugcaucugcaauggaugcuacuua    a   uu 
    gg ugc     ugg c cucuuugc au UUCCACAGCUUU UUGAAC                        gcuu ugc  a
    || |||     ||| | |||||||| || |||||||||||| ||||||                        |||| |||   
    uc acg     acc g gagagacg uA AGGGUGUCGAAA AACUUG                        ugag acg  a
uaau  g   gguua   a a        u  A            U      ---------------------Ucg    a   uc 

Annotation confidence High

Genome context

1: 46677004-46677155 [-]

Mature bdi-miR396d-5p

• Accession: MIMAT0020671
• Description: Brachypodium distachyon bdi-miR396d-5p mature miRNA
• Sequence: 33 - UUCCACAGCUUUCUUGAACU - 52
• Evidence: experimental ; Illumina [2]

Mature bdi-miR396d-3p

• Accession: MIMAT0027051
• Description: Brachypodium distachyon bdi-miR396d-3p mature miRNA
• Sequence: 100 - UGUUCAAUAAAGCUGUGGGAAA - 121
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293


2. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443