Stem-loop bdi-MIR395m

Accession

MI0018219

Description

Brachypodium distachyon bdi-MIR395m precursor miRNA

Literature search

3 open access papers mention bdi-MIR395m
(31 sentences)

Sequence

ugguauuaccaugaguuccuuugcaagcauuucacguacgaggcacuaucccaagggcuauugUGAAGUGUUUGGGGGAACUCuuggugucacca
((((..(((((.(((((((((..(((((((((((((....((.(.((......))).))..)))))))))))))))))))))).)))))..))))

Structure

    au     u         ug             uacg  g a  au 
uggu  uacca gaguuccuu  caagcauuucacg    ag c cu  c
||||  ||||| |||||||||  |||||||||||||    || | ||   
acca  guggu CUCAAGGGG  GUUUGUGAAGUgu    uc g ga  c
    cu     u         --             --ua  g -  ac 

Annotation confidence Not enough data

Genome context

1: 55440156-55440250 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from bdi-MIR395m

Mature bdi-miR395m

• Accession: MIMAT0020744
• Description: Brachypodium distachyon bdi-miR395m mature miRNA
• Sequence: 64 - UGAAGUGUUUGGGGGAACUC - 83
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19772667
   Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response
   Zhang J, Xu Y, Huan Q, Chong K
   BMC Genomics (2009) 10:449