Stem-loop bdi-MIR169a

Accession

MI0018120

Description

Brachypodium distachyon bdi-MIR169a precursor miRNA

Literature search

3 open access papers mention bdi-MIR169a
(28 sentences)

Sequence

17591 reads, 365.0 reads per million, 20 experiments

ggaaggguaggauacguuuuugcuugcccguggccgcgcuaacauuaggcuuggggacuauggugCAGCCAAGGAUGACUUGCCGAUCGaaacgaugcacaauaugcaucgAUCGGCGAGUUGUUCUUGGCUACaucuuagcuccugccccucauguuaggccggcaugcggugguaugua
((..(((((((...........)))))))....))((.(((((((.(((...((((.(((.((((.((((((((((((((((((((((((.....((((.....)))))))))))))))))))))))))))).)))).)))))))....))).)))))))))..((((((....)))))).

Structure

ggaaggguaggauacguuuuugcuugcccguggcc  g       u   -cuu    a   u    C                        aacga    c 
                                   gc cuaacau agg    gggg cua ggug AGCCAAGGAUGACUUGCCGAUCGa     ugca a
                                   || ||||||| |||    |||| ||| |||| ||||||||||||||||||||||||     |||| a
                                   cg gauugua ucc    ccuc gau cuaC UCGGUUCUUGUUGAGCGGCUAgcu     acgu u
----------------auguaugguggcguacggc  -       c   ccgu    -   u    A                        -----    a 

Annotation confidence High

Genome context

Unknown

Mature bdi-miR169a-5p

• Accession: MIMAT0020695
• Description: Brachypodium distachyon bdi-miR169a-5p mature miRNA
• Sequence: 66 - CAGCCAAGGAUGACUUGCCGAUCG - 89
• Evidence: experimental ; Illumina [2-3]

Mature bdi-miR169a-3p

• Accession: MIMAT0027068
• Description: Brachypodium distachyon bdi-miR169a-3p mature miRNA
• Sequence: 112 - AUCGGCGAGUUGUUCUUGGCUAC - 134
• Evidence: experimental ; Illumina [2-3]

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293


2. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443


3. PubMed ID: 24367943
   Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon
   Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ
   Genome Biol (2013) 14:R145