Stem-loop bdi-MIR166f

Accession

MI0018083

Description

Brachypodium distachyon bdi-MIR166f precursor miRNA

Literature search

2 open access papers mention bdi-MIR166f
(19 sentences)

Sequence

2714857 reads, 40463.0 reads per million, 21 experiments

aggggaagagagggaagcauggugucuggAAUGGAGGCUGAUCCAAGAUCcuugguccgaaauauuguguuucuguguuuguugccaaggaucUCGGACCAGGCUUCAUUCCucacaccgagcuuccgcugcgagauuguguuuc
..........((((((((.((((((..(((((((((.(((.(((.(((((((((((...((((((.(.....).))))))...))))))))))).))).))).)))))))))..)))))).)))))).))..(((((...)))))

Structure

-----aggggaagag  -      a      cu         G   A   A           ccg      u u 
               ag ggaagc uggugu  ggAAUGGAG CUG UCC AGAUCcuuggu   aaauau g g
               || |||||| ||||||  ||||||||| ||| ||| |||||||||||   |||||| | u
               uc ccuucg gccaca  CCUUACUUC GAC AGG Ucuaggaaccg   uuugug c u
cuuuguguuagagcg  g      a      cu         G   C   C           uug      u u 

Annotation confidence Not enough data

Genome context

4: 6090867-6091011 [-]

Mature bdi-miR166f-5p

• Accession: MIMAT0056993
• Description: Brachypodium distachyon bdi-miR166f-5p mature miRNA
• Sequence: 30 - AAUGGAGGCUGAUCCAAGAUC - 50
• Evidence: experimental ; unknown

Mature bdi-miR166f-3p

• Accession: MIMAT0020658
• Description: Brachypodium distachyon bdi-miR166f-3p mature miRNA
• Sequence: 94 - UCGGACCAGGCUUCAUUCC - 112
• Evidence: not_experimental

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293