Stem-loop bdi-MIR398a

Accession

MI0018116

Description

Brachypodium distachyon bdi-MIR398a precursor miRNA

Literature search

3 open access papers mention bdi-MIR398a
(4 sentences)

Sequence

2421 reads, 24.0 reads per million, 20 experiments

aagaacagacagcacaugcgaggaaguuccugcAGGGUCGAAUUGGGAACACAugagauggaugguccgcugagcucugagcucgagcucggccaUGUGUUCUCAGGUCGCCCCUGuugggucuuccgugccauggauugaugauugccu
.....((..(((..((((((.(((((.(((.((((((.(((.(((((((((((((....(((...)))(((((((((.......)))))))))))))))))))))).))).)))))).))).))))).)).))))..))).)).......

Structure

--aagaa  ga   ca    -  a     u   u      U   A             agauggauggucc         ug 
       ca  cag  caug cg ggaag ucc gcAGGG CGA UUGGGAACACAug             gcugagcuc  a
       ||  |||  |||| || ||||| ||| |||||| ||| |||||||||||||             |||||||||  g
       gu  guu  guac gu ccuuc ggg uGUCCC GCU GACUCUUGUGUac             cggcucgag  c
uccguua  -a   ag    c  g     u   u      C   G             -------------         cu 

Annotation confidence High

Genome context

2: 35924413-35924562 [-]

Mature bdi-miR398a-5p

• Accession: MIMAT0057002
• Description: Brachypodium distachyon bdi-miR398a-5p mature miRNA
• Sequence: 34 - AGGGUCGAAUUGGGAACACA - 53
• Evidence: experimental ; unknown

Mature bdi-miR398a-3p

• Accession: MIMAT0020691
• Description: Brachypodium distachyon bdi-miR398a-3p mature miRNA
• Sequence: 96 - UGUGUUCUCAGGUCGCCCCUG - 116
• Evidence: not_experimental

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293