Stem-loop bdi-MIR319b

Accession

MI0018236

Description

Brachypodium distachyon bdi-MIR319b precursor miRNA

Literature search

1 open access papers mention bdi-MIR319b
(2 sentences)

Sequence

11573437 reads, 51420.0 reads per million, 21 experiments

auguauaagagagcucucuucaguccacucucagaugacuguaggguuuuauuAGCUGCCGAUUCAUCCAUUCaccuaccaagaaucaugagggcguauaugucuugguagccgacuggauggcacgggagcuacaaaaagcuuuucguuguuuguggUUGGACUGAAGGGUGCUCCCUugcuuacaaua
.((((((((.((((.((((((((((((.((.((((((((...(((.((((..(((((.(((..(((((((.((..(((((((((..((((........)))))))))))))..)).)))))))..))).)))))..)))).)))...)))))))).)).)))))))))))).)))).))))..))))...

Structure

--a    --    a    u            c  u        ugu   g    au     G   AU       U  ac         au    agg 
   ugua  uaag gagc cucuucagucca uc cagaugac   agg uuuu  uAGCU CCG  UCAUCCA UC  cuaccaaga  caug   g
   ||||  |||| |||| |||||||||||| || ||||||||   ||| ||||  ||||| |||  ||||||| ||  |||||||||  ||||    
   acau  guUC CUCG GGGAAGUCAGGU gg guuuguug   uuc aaaa  aucga ggc  gguaggu ag  gaugguucu  guau   c
aua    uc    C    U            U  u        cuu   g    ac     g   ac       c  cc         --    aug 

Annotation confidence Not enough data

Genome context

2: 45992390-45992579 [-]

Mature bdi-miR319b-5p

• Accession: MIMAT0027099
• Description: Brachypodium distachyon bdi-miR319b-5p mature miRNA
• Sequence: 54 - AGCUGCCGAUUCAUCCAUUC - 73
• Evidence: experimental ; Illumina [2]

Mature bdi-miR319b-3p

• Accession: MIMAT0020761
• Description: Brachypodium distachyon bdi-miR319b-3p mature miRNA
• Sequence: 159 - UUGGACUGAAGGGUGCUCCCU - 179
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 19772667
   Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response
   Zhang J, Xu Y, Huan Q, Chong K
   BMC Genomics (2009) 10:449


2. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443