Stem-loop bdi-MIR156c

Accession

MI0018109

Description

Brachypodium distachyon bdi-MIR156c precursor miRNA

Literature search

5 open access papers mention bdi-MIR156c
(25 sentences)

Sequence

1185390 reads, 27923.0 reads per million, 21 experiments

agcuccugguguugagagggccucgagagauUGACAGAAGAGAGUGAGCACacggcgugauguccggcauauguaugccgucgucgccgcguGCUCACUCCUCUUUCUGUCAGCcucuuucucuccggaguuuaucuugcauccag
.....(((((((.((((.(((((.(((((((((((((((((((((((((((.((((..((((..((((((....)))))).)))))))).))))))))).))).)))))))))......)))))).)).)))..))))))).))))

Structure

agcuc    -   u    -g   -  c      ------         -   -         a    gu    uc      a 
     cugg ugu gaga  ggc cu gagaga      uUGACAGAA GAG AGUGAGCAC cggc  gaug  cggcau u
     |||| ||| ||||  ||| || ||||||      ||||||||| ||| ||||||||| ||||  ||||  ||||||  
     gacc acg uucu  uug gg cucucu      GACUGUCUU CUC UCACUCGug gccg  cugc  gccgua g
-----    u   -    au   a  c      uucucC         U   C         c    --    -u      u 

Annotation confidence High

Genome context

3: 4336022-4336167 [-]

Mature bdi-miR156c-5p

• Accession: MIMAT0020684
• Description: Brachypodium distachyon bdi-miR156c-5p mature miRNA
• Sequence: 32 - UGACAGAAGAGAGUGAGCAC - 51
• Evidence: not_experimental

Mature bdi-miR156c-3p

• Accession: MIMAT0057000
• Description: Brachypodium distachyon bdi-miR156c-3p mature miRNA
• Sequence: 93 - GCUCACUCCUCUUUCUGUCAGC - 114
• Evidence: experimental ; unknown

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293