Stem-loop bdi-MIR167b

Accession

MI0018091

Description

Brachypodium distachyon bdi-MIR167b precursor miRNA

Literature search

2 open access papers mention bdi-MIR167b
(7 sentences)

Sequence

723708 reads, 13764.0 reads per million, 21 experiments

gugcuacuuacuuacugcccgagggaacgagUGAAGCUGCCAGCAUGAUCUAgcucagcgugaucaagcaagauucacacauacacgugugguuuuuuugagcuauagcucgauugaucuugaggucaugccuugcuaGGUCAUGCUGCGGCAGCCUCACUUCuucccgccguuugggcaugcacagcug
((((...........((((((((((((.((((((.(((((((((((((((((((...((((((((...((((((((((((......)))))......((((((....))))))..))))))).))))))))...)))))))))))))..)))))).)))))).))))).....))))))).)))).....

Structure

-----    uacuuacuuac       -----     c      A      --             uca        aag       cacacauacacgugugguuuuu      u 
     gugc           ugcccga     gggaa gagUGA GCUGCC  AGCAUGAUCUAgc   gcgugauc   caagauu                      uugagc a
     ||||           |||||||     ||||| |||||| ||||||  |||||||||||||   ||||||||   |||||||                      ||||||  
     cacg           acggguu     cccuu UUCACU CGACGG  UCGUACUGGaucg   cguacugg   guucuag                      agcucg u
gucga    ----------u       ugccg     C      C      CG             uuc        --a       --------------------uu      a 

Annotation confidence High

Genome context

1: 3770002-3770191 [+]

Mature bdi-miR167b-5p

• Accession: MIMAT0020666
• Description: Brachypodium distachyon bdi-miR167b-5p mature miRNA
• Sequence: 32 - UGAAGCUGCCAGCAUGAUCUA - 52
• Evidence: not_experimental

Mature bdi-miR167b-3p

• Accession: MIMAT0056996
• Description: Brachypodium distachyon bdi-miR167b-3p mature miRNA
• Sequence: 139 - GGUCAUGCUGCGGCAGCCUCACUUC - 163
• Evidence: experimental ; unknown

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293