Stem-loop bdi-MIR166h

Accession

MI0025296

Description

Brachypodium distachyon bdi-MIR166h precursor miRNA

Literature search

2 open access papers mention bdi-MIR166h
(22 sentences)

Sequence

uagguuaaggGGUUUGUUGUCUGGCUCGGGGcucccggucuugaucgaugcgcgacuccaucucccuucaccggggagacgugcguugcguacguugaccggggaucUCGGACCAGGCUUCAAUCCCUuuaaccaugcgg
..((((((((((.(((..((((((.((((((.((((((((.....((.((((((((.((.(((((((.....))))))).).).))))))))))..)))))))).)))))).))))))..))).))))))))))......

Structure

----ua          U   UU      C      c        uugau  a        u - a       u 
      gguuaaggGG UUG  GUCUGG UCGGGG ucccgguc     cg ugcgcgac c c ucucccu c
      |||||||||| |||  |||||| |||||| ||||||||     || |||||||| | | ||||||| a
      ccaauuUCCC AAC  CGGACC GGCUcu ggggccag     gc augcguug g g agagggg c
ggcgua          U   UU      A      a        ---uu  -        c u c       c 

Annotation confidence Not enough data

Genome context

3: 57427334-57427473 [+]

Mature bdi-miR166h-5p

• Accession: MIMAT0030087
• Description: Brachypodium distachyon bdi-miR166h-5p mature miRNA
• Sequence: 11 - GGUUUGUUGUCUGGCUCGGGG - 31
• Evidence: experimental ; Illumina [1]

Mature bdi-miR166h-3p

• Accession: MIMAT0030088
• Description: Brachypodium distachyon bdi-miR166h-3p mature miRNA
• Sequence: 108 - UCGGACCAGGCUUCAAUCCCU - 128
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443