Stem-loop osa-MIR167a

Accession

MI0000676

Description

Oryza sativa osa-MIR167a precursor miRNA

Literature search

85 open access papers mention osa-MIR167a
(273 sentences)

Sequence

80262 reads, 55831 reads per million, 2 experiments

uagugugaaugagUGAAGCUGCCAGCAUGAUCUAgcucugauuaaucggcacuguuggcguacagucgauugacuaaucgucagaucuguguguguaaaucacuguuagAUCAUGCAUGACAGCCUCAUUUcuucacacug
(((((((((.((((((.((((.((((((((((((((..(((((.((..((((..((((((...((((....))))...))))))....))))..)).)))))..)))))))))))).)).)))).)))))).)))))))))

Structure

         u      A    C  -            uc     a  cg    --ug      uac    g 
uagugugaa gagUGA GCUG CA GCAUGAUCUAgc  ugauu au  gcac    uuggcg   aguc a
||||||||| |||||| |||| || ||||||||||||  ||||| ||  ||||    ||||||   ||||  
gucacacuu UUUACU CGAC GU CGUACUAgauug  acuaa ug  ugug    gacugc   ucag u
         c      C    A  A            uc     a  ug    ucua      uaa    u 

Annotation confidence High

Genome context

Chr12: 25476808-25476948 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from osa-MIR167a

Mature osa-miR167a-5p

• Accession: MIMAT0000641
• Description: Oryza sativa osa-miR167a-5p mature miRNA
• Sequence: 14 - UGAAGCUGCCAGCAUGAUCUA - 34
• Evidence: not_experimental

Mature osa-miR167a-3p

• Accession: MIMAT0006780
• Description: Oryza sativa osa-miR167a-3p mature miRNA
• Sequence: 110 - AUCAUGCAUGACAGCCUCAUUU - 131
• Evidence: experimental ; cloned [2]

References

1. PubMed ID: 12101121
   MicroRNAs in plants
   "Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP"
   "Genes Dev (2002) 16:1616-1626


2. PubMed ID: 18312648
   Identification of novel and candidate miRNAs in rice by high throughput sequencing
   Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK
   BMC Plant Biol (2008) 8:25