Stem-loop bdi-MIR395e

Accession

MI0018220

Description

Brachypodium distachyon bdi-MIR395e precursor miRNA

Literature search

3 open access papers mention bdi-MIR395e
(33 sentences)

Sequence

guugguugucaccuggaGUUCUCCUCAAAUCACUUCAGUagcuagcuagcuugugccuccuuguugcauugccacuguuuuauaagugugcuuggggccagagagcugugcacagUGAAGUGUUUGGGGGAACUCuggguggcaaccagc
((((((((((((((((((((((((.((((.(((((((.(.(((((((..((.(.(((.((.....(((....((((........)))))))..))))))))..))))).))..).)))))))))))))))))))))))))))))))))))

Structure

                        U    U       G -a  -     ag  u u   u  uuguu   uugc    guu 
guugguugucaccuggaGUUCUCC CAAA CACUUCA U  gc uagcu  cu g gcc cc     gca    cacu   u
|||||||||||||||||||||||| |||| ||||||| |  || |||||  || | ||| ||     |||    ||||    
cgaccaacgguggguCUCAAGGGG GUUU GUGAAGU a  cg gucga  ga c cgg gg     cgu    guga   u
                        -    -       g ca  u     ga  - -   -  ---uu   ----    aua 

Annotation confidence Low

Genome context

5: 25455195-25455344 [+]

Clustered miRNAs

10 other miRNAs are < 10 kb from bdi-MIR395e

Mature bdi-miR395e-3p

• Accession: MIMAT0020745
• Description: Brachypodium distachyon bdi-miR395e-3p mature miRNA
• Sequence: 116 - UGAAGUGUUUGGGGGAACUC - 135
• Evidence: experimental ; Illumina [1-2]

Mature bdi-miR395e-5p

• Accession: MIMAT0027089
• Description: Brachypodium distachyon bdi-miR395e-5p mature miRNA
• Sequence: 18 - GUUCUCCUCAAAUCACUUCAGU - 39
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19772667
   Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response
   Zhang J, Xu Y, Huan Q, Chong K
   BMC Genomics (2009) 10:449


2. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443