Accession
MI0018082
Description
Brachypodium distachyon
bdi-MIR169j precursor miRNA
Literature search
4 open access papers mention bdi-MIR169j
(28 sentences)
(28 sentences)
Sequence
5369
reads,
95.0
reads per million, 19 experiments
cuuacaUGGAGAUAAGGAGCCUACCUCUGUuagccaggaauggcuugccuacgcacacauuuuucgguucaucacaggggcaaaacuaacuuggagauagccccuaguaugauggacggaguguggcugcauggucaagccuuccugacuaggAGAGUGCUCCUCAUCCCCCAUGcuaggcug
(((((((((.(((.((((((....((((.((((.((((((.((((((.(((.(((..(((..(((.(((((((((((((((..................)))))).))..))))))).))).)))..))).))).)))))))))))).)))).)))).)))))).)))..))))).))))...
(((((((((.(((.((((((....((((.((((.((((((.((((((.(((.(((..(((..(((.(((((((((((((((..................)))))).))..))))))).))).)))..))).))).)))))))))))).)))).)))).)))))).)))..))))).))))...
Structure
--- - -A A CUAC G c u c c ca uu g -- - aaaacuaa cuua caUGG GAU AGGAGC CUCU Uuag caggaa ggcuug cua gca cau uuc guucauc ac aggggc c |||| ||||| ||| |||||| |||| |||| |||||| |||||| ||| ||| ||| ||| ||||||| || |||||| ggau GUACC CUA UCCUCG GAGA gauc guccuu ccgaac ggu cgu gug gag cagguag ug uccccg u guc c CC C ---U g a - u a cg -u g ua a auagaggu
Annotation confidence
Medium
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Genome context
4: 44513754-44513936 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from bdi-MIR169j
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature bdi-miR169j-5p
| Accession | MIMAT0020657 |
| Description | Brachypodium distachyon bdi-miR169j-5p mature miRNA |
| Sequence | 7 - UGGAGAUAAGGAGCCUACCUCUGU - 30 |
| Evidence |
experimental
Illumina [2] |
Mature bdi-miR169j-3p
| Accession | MIMAT0027042 |
| Description | Brachypodium distachyon bdi-miR169j-3p mature miRNA |
| Sequence | 154 - AGAGUGCUCCUCAUCCCCCAUG - 175 |
| Evidence |
experimental
Illumina [2] |
References
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