Stem-loop bdi-MIR395q

Accession

MI0029162

Description

Brachypodium distachyon bdi-MIR395q precursor miRNA

Literature search

3 open access papers mention bdi-MIR395q
(28 sentences)

Sequence

197625 reads, 1766.0 reads per million, 21 experiments

aauuaucaugaGUUCCUUGCAAGCACUUCAUGaggcacuaucccaagggcuacuaUGAAGUGUUUGGGGGAACUCUugauauca
...(((((.(((((((((.(((((((((((((.(((.((......)).)))..)))))))))))))))))))))).)))))...

Structure

aau     u         G             -a   a  au 
   uauca gaGUUCCUU CAAGCACUUCAUG  ggc cu  c
   ||||| ||||||||| |||||||||||||  ||| ||   
   auagu CUCAAGGGG GUUUGUGAAGUau  ucg ga  c
acu     U         -             ca   g  ac 

Annotation confidence High

Genome context

5: 25456843-25456926 [+]

Clustered miRNAs

10 other miRNAs are < 10 kb from bdi-MIR395q

Mature bdi-miR395q-5p

• Accession: MIMAT0057043
• Description: Brachypodium distachyon bdi-miR395q-5p mature miRNA
• Sequence: 12 - GUUCCUUGCAAGCACUUCAUG - 32
• Evidence: experimental ; unknown

Mature bdi-miR395q-3p

• Accession: MIMAT0035520
• Description: Brachypodium distachyon bdi-miR395q-3p mature miRNA
• Sequence: 56 - UGAAGUGUUUGGGGGAACUCU - 76
• Evidence: not_experimental

References

1. PubMed ID: 24367943
   Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon
   Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ
   Genome Biol (2013) 14:R145