Stem-loop bdi-MIR160a

Accession

MI0018086

Description

Brachypodium distachyon bdi-MIR160a precursor miRNA

Literature search

2 open access papers mention bdi-MIR160a
(6 sentences)

Sequence

ugcggaaggaggugaaaaaaaaaaugggauaUGCCUGGCUCCCUGUAUGCCAcucgcguagcugccaacaacucaguuugagcucccccggcccaaacgcaaacguuggcucuaccgcggaugGCGUGCGAGGAGCCAAGCAUGaccgucucucccccucccucccucucucccu
...(((.(((((.((........((((..(((((.(((((((.(((((((((.((((((((..((((((......(((((.(((.....))).)))))......)))))).))).))))).))))))))).))))))).))))).)))).........))))))).)))......

Structure

---ugc   a     u  -aaaaaaaa    ga     C       C         c     -   cu      aacuca     a   c 
      gga ggagg ga         augg  uaUGC UGGCUCC UGUAUGCCA ucgcg uag  gccaac      guuug gcu c
      ||| ||||| ||         ||||  ||||| ||||||| ||||||||| ||||| |||  ||||||      ||||| ||| c
      ucu ccucc cu         ugcc  GUACG ACCGAGG GCGUGCGgu ggcgc auc  cgguug      caaac cgg c
ucccuc   c     -  cccccucuc    -a     A       A         a     c   -u      caaacg     c   c 

Annotation confidence Not enough data

Genome context

1: 4550703-4550877 [-]

Mature bdi-miR160a-5p

• Accession: MIMAT0020661
• Description: Brachypodium distachyon bdi-miR160a-5p mature miRNA
• Sequence: 32 - UGCCUGGCUCCCUGUAUGCCA - 52
• Evidence: experimental ; Illumina [2]

Mature bdi-miR160a-3p

• Accession: MIMAT0027044
• Description: Brachypodium distachyon bdi-miR160a-3p mature miRNA
• Sequence: 124 - GCGUGCGAGGAGCCAAGCAUG - 144
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293


2. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443