Stem-loop osa-MIR394

Accession

MI0001027

Description

Oryza sativa osa-MIR394 precursor miRNA

Literature search

37 open access papers mention osa-MIR394
(78 sentences)

Sequence

277045 reads, 1948.0 reads per million, 141 experiments

uacugagaguucuUUGGCAUUCUGUCCACCUCCuugucgaauccucagagacagaaaucucauaucuguugaucuuggAGGUGGGCAUACUGCCAAUGGagcuguguagg
..((((.((((((((((((...(((((((((((..(((((.......((((......)))).......)))).)..)))))))))))...)))))).)))))).).))).

Structure

ua   - g      -      UUC           uu -    auccuca    ca 
  cug a aguucu UUGGCA   UGUCCACCUCC  g ucga       gaga  g
  ||| | |||||| ||||||   |||||||||||  | ||||       ||||   
  gau u ucgaGG AACCGU   ACGGGUGGAgg  c aguu       cucu  a
-g   g g      U      CAU           uu u    gucuaua    aa 

Annotation confidence High

Comments

This sequence belongs to the miR394 family of miRNAs, which are predicted to target mRNAs coding for F-box proteins [1].

Genome context

2: 27148154-27148263 [+]

Mature osa-miR394-5p

• Accession: MIMAT0000958
• Description: Oryza sativa osa-miR394-5p mature miRNA
• Sequence: 14 - UUGGCAUUCUGUCCACCUCC - 33
• Evidence: not_experimental

Mature osa-miR394-3p

• Accession: MIMAT0055916
• Description: Oryza sativa osa-miR394-3p mature miRNA
• Sequence: 79 - AGGUGGGCAUACUGCCAAUGG - 99
• Evidence: experimental ; unknown

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799