Stem-loop bdi-MIR393a

Accession

MI0018119

Description

Brachypodium distachyon bdi-MIR393a precursor miRNA

Literature search

2 open access papers mention bdi-MIR393a
(5 sentences)

Sequence

ugagagcgagagggcaacaaugucuuggggaagcaUCCAAAGGGAUCGCAUUGAUCcuucgacuccauuaaugguguucgucaucgucugcugauugucgacgacggaucaugcgauccuuuuggaggcuuccucuagccauuacuacacuaagcauuc
.(((.((...((......((((.((.((((((((.((((((((((((((((.(((((..((((.(((....))).).)))...(((((.((.....)).))))).))))))))))))))))))))).)))))))).)).))))......))..)).)))

Structure

u   a  gag  ggcaac    u  u        a                U     -----------------------uu   - u   u 
 gag gc   ag      aaug cu ggggaagc UCCAAAGGGAUCGCAU GAUCc                         cga c cca u
 ||| ||   ||      |||| || |||||||| |||||||||||||||| |||||                         ||| | |||  
 cuu cg   uc      uuac ga cuccuucg agguuuuccuagcgua cuagg                         gcu g ggu a
-   a  -aa  acauca    c  u        g                -     cagcagcuguuagucgucugcuacu   u u   a 

Annotation confidence Not enough data

Genome context

2: 2001005-2001163 [-]

Mature bdi-miR393a

• Accession: MIMAT0020694
• Description: Brachypodium distachyon bdi-miR393a mature miRNA
• Sequence: 36 - UCCAAAGGGAUCGCAUUGAUC - 56
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293


2. PubMed ID: 19772667
   Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response
   Zhang J, Xu Y, Huan Q, Chong K
   BMC Genomics (2009) 10:449