Stem-loop bdi-MIR5198

Accession

MI0018230

Description

Brachypodium distachyon bdi-MIR5198 precursor miRNA

Sequence

1006 reads, 13.0 reads per million, 21 experiments

ccgagcUCCCUCAAUCUCUUUUCCGCUUUcugcuuggcuggaaaggaguugggguggauagcagagaGGGGAAAAGAGAUUGAGGGAGcucgg
((((((((((((((((((((((((.(((((((((((.((.((......)).)).))...))))))))).))))))))))))))))))))))))

Structure

                        G         ---  g  g  aa 
ccgagcUCCCUCAAUCUCUUUUCC CUUUcugcu   ug cu ga  g
|||||||||||||||||||||||| |||||||||   || || ||   
ggcucGAGGGAGUUAGAGAAAAGG Gagagacga   gu gg uu  g
                        G         uag  g  g  ga 

Annotation confidence High

Genome context

1: 3141686-3141778 [+]

Mature bdi-miR5198-5p

• Accession: MIMAT0057022
• Description: Brachypodium distachyon bdi-miR5198-5p mature miRNA
• Sequence: 7 - UCCCUCAAUCUCUUUUCCGCUUU - 29
• Evidence: experimental ; unknown

Mature bdi-miR5198-3p

• Accession: MIMAT0020755
• Description: Brachypodium distachyon bdi-miR5198-3p mature miRNA
• Sequence: 68 - GGGGAAAAGAGAUUGAGGGAG - 88
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19772667
   Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response
   Zhang J, Xu Y, Huan Q, Chong K
   BMC Genomics (2009) 10:449