Stem-loop bdi-MIR397b

Accession

MI0025288

Description

Brachypodium distachyon bdi-MIR397b precursor miRNA

Literature search

2 open access papers mention bdi-MIR397b
(11 sentences)

Sequence

207522 reads, 2256.0 reads per million, 21 experiments

gcagaggcuugaUUGAGUGCAGCGUUGAUGAACcccucugcgcccaggccggccauggaacgcgggggguUCUUCGACCCUGCACCCAAUCacgccucugcu
((((((((.((((((.((((((.(((((.(((((((.(((((.(((((....)).)))..)))))))))))).))))).)))))).)))))).)))))))).

Structure

-        u      A      C     U       u     -c   -  c 
 gcagaggc ugaUUG GUGCAG GUUGA GAACccc cugcg  cca gg c
 |||||||| |||||| |||||| ||||| ||||||| |||||  ||| ||  
 cgucuccg aCUAAC CACGUC CAGCU CUugggg ggcgc  ggu cc g
u        c      C      C     U       -     aa   a  g 

Annotation confidence High

Genome context

Unknown

Mature bdi-miR397b-5p

• Accession: MIMAT0030065
• Description: Brachypodium distachyon bdi-miR397b-5p mature miRNA
• Sequence: 13 - UUGAGUGCAGCGUUGAUGAAC - 33
• Evidence: experimental ; Illumina [1]

Mature bdi-miR397b-3p

• Accession: MIMAT0030066
• Description: Brachypodium distachyon bdi-miR397b-3p mature miRNA
• Sequence: 71 - UCUUCGACCCUGCACCCAAUC - 91
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23264558
   Addressing the role of microRNAs in reprogramming leaf growth during drought stress in Brachypodium distachyon
   "Bertolini E, Verelst W, Horner DS, Gianfranceschi L, Piccolo V, Inze D, Pe ME, Mica E"
   "Mol Plant (2013) 6:423-443