Stem-loop bdi-MIR171e

Accession

MI0029160

Description

Brachypodium distachyon bdi-MIR171e precursor miRNA

Literature search

1 open access papers mention bdi-MIR171e
(2 sentences)

Sequence

gaaggagcgauauuggugagguucaauccgaugcuagauuuuacaucaguguuaagaucuguaucUGAUUGAGCCGUGCCAAUAUCucucuucuu
..(((((.((((((((((.(((((((((.(((((.((((((((((....)).))))))))))))).))))))))).)))))))))).)))))...

Structure

-ga     c          a         c     u        -  u 
   aggag gauauuggug gguucaauc gaugc agauuuua ca c
   ||||| |||||||||| ||||||||| ||||| |||||||| ||  
   uucuc CUAUAACCGU CCGAGUUAG cuaug ucuagaau gu a
uuc     u          G         U     -        u  g 

Annotation confidence Not enough data

Genome context

1: 30824648-30824742 [-]

Mature bdi-miR171e

• Accession: MIMAT0035518
• Description: Brachypodium distachyon bdi-miR171e mature miRNA
• Sequence: 66 - UGAUUGAGCCGUGCCAAUAUC - 86
• Evidence: not_experimental

References

1. PubMed ID: 24367943
   Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon
   Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ
   Genome Biol (2013) 14:R145