Stem-loop osa-MIR396g

Accession

MI0013047

Description

Oryza sativa osa-MIR396g precursor miRNA

Literature search

53 open access papers mention osa-MIR396g
(133 sentences)

Sequence

5185421 reads, 28144.0 reads per million, 142 experiments

ggcgacgucgaggcguggaaggagucgagguggagcuggagaggagCGCCGGCGCCGGCGCCGUagcugggcgcgucggcgucgugcggcggcggcgagauggagagcgcggacgggcgguagacggcggcggcggcggggggcggcauuUCCACAGGCUUUCUUGAACGGuucuugccgc
(((((....(((.(((..((((((((...(((((((((........(.(((.(((((.((((((.(((..((.((((.(((((((...((....))...)))....)))).)))).)))))..)))))).))))).))).)..))))...))))).))).)))))..))).))))))))..

Structure

--     cguc   g   gg     -   gag     ---    gagaggag G   G     G      -a   gg  g    g    ----   gcg  g 
  ggcga    gag cgu  aagga guc   gugga   gcug        C CCG CGCCG CGCCGU  gcu  gc cguc gcgu    cgu   gc g
  |||||    ||| |||  ||||| |||   |||||   ||||        | ||| ||||| ||||||  |||  || |||| ||||    |||   ||  
  ccguu    cuu GCA  UUCUU CGG   CACCU   cggc        g ggc gcggc gcggca  ugg  cg gcag cgcg    gua   cg c
cg     ----   G   AG     U   --A     uua    ------gg g   g     g      ga   --  g    g    agag   gag  g 

Annotation confidence Low

Genome context

6: 5300630-5300810 [-]

Mature osa-miR396g-5p

• Accession: MIMAT0056148
• Description: Oryza sativa osa-miR396g-5p mature miRNA
• Sequence: 47 - CGCCGGCGCCGGCGCCGU - 64
• Evidence: experimental ; unknown

Mature osa-miR396g-3p

• Accession: MIMAT0013833
• Description: Oryza sativa osa-miR396g-3p mature miRNA
• Sequence: 151 - UCCACAGGCUUUCUUGAACGG - 171
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19903869
   Rice MicroRNA effector complexes and targets
   "Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y"
   "Plant Cell (2009) 21:3421-3435