Stem-loop osa-MIR396g

Accession

MI0013047

Description

Oryza sativa osa-MIR396g precursor miRNA

Literature search

53 open access papers mention osa-MIR396g
(131 sentences)

Sequence

1616 reads, 1122 reads per million, 2 experiments

ggcgacgucgaggcguggaaggagucgagguggagcuggagaggagcgccggcgccggcgccguagcugggcgcgucggcgucgugcggcggcggcgagauggagagcgcggacgggcgguagacggcggcggcggcggggggcggcauuUCCACAGGCUUUCUUGAACGGuucuugccgc
(((((....(((.(((..((((((((...(((((((((........(.(((.(((((.((((((.(((..((.((((.(((((((...((....))...)))....)))).)))).)))))..)))))).))))).))).)..))))...))))).))).)))))..))).))))))))..

Structure

--     cguc   g   gg     -   gag     ---    gagaggag g   g     g      -a   gg  g    g    ----   gcg  g 
  ggcga    gag cgu  aagga guc   gugga   gcug        c ccg cgccg cgccgu  gcu  gc cguc gcgu    cgu   gc g
  |||||    ||| |||  ||||| |||   |||||   ||||        | ||| ||||| ||||||  |||  || |||| ||||    |||   ||  
  ccguu    cuu GCA  UUCUU CGG   CACCU   cggc        g ggc gcggc gcggca  ugg  cg gcag cgcg    gua   cg c
cg     ----   G   AG     U   --A     uua    ------gg g   g     g      ga   --  g    g    agag   gag  g 

Annotation confidence Not enough data

Genome context

Chr6: 5300630-5300810 [-]

Mature osa-miR396g

• Accession: MIMAT0013833
• Description: Oryza sativa osa-miR396g mature miRNA
• Sequence: 151 - UCCACAGGCUUUCUUGAACGG - 171
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19903869
   Rice MicroRNA effector complexes and targets
   "Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y"
   "Plant Cell (2009) 21:3421-3435